Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRZ31_RS12230 Genome accession   NZ_CP102365
Coordinates   2653042..2654283 (+) Length   413 a.a.
NCBI ID   WP_010635960.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BC15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2648042..2659283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ31_RS12205 (NRZ31_12205) ampD 2648411..2648983 (-) 573 WP_010635964.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NRZ31_RS12210 (NRZ31_12210) - 2649107..2649577 (+) 471 WP_010635963.1 TIGR02281 family clan AA aspartic protease -
  NRZ31_RS12215 (NRZ31_12215) nadC 2649582..2650439 (+) 858 WP_010635962.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NRZ31_RS12220 (NRZ31_12220) tapA 2650761..2651213 (+) 453 WP_005305643.1 type IVa pilus major pilin TapA -
  NRZ31_RS12225 (NRZ31_12225) pilB 2651220..2652926 (+) 1707 WP_005305646.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NRZ31_RS12230 (NRZ31_12230) pilC 2653042..2654283 (+) 1242 WP_010635960.1 type II secretion system F family protein Machinery gene
  NRZ31_RS12235 (NRZ31_12235) pilD 2654306..2655178 (+) 873 WP_017766419.1 prepilin peptidase Machinery gene
  NRZ31_RS12240 (NRZ31_12240) coaE 2655198..2655812 (+) 615 WP_017766418.1 dephospho-CoA kinase -
  NRZ31_RS12245 (NRZ31_12245) zapD 2655850..2656572 (+) 723 WP_026141277.1 cell division protein ZapD -
  NRZ31_RS12250 (NRZ31_12250) yacG 2656582..2656776 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  NRZ31_RS12255 (NRZ31_12255) mutT 2656837..2657250 (-) 414 WP_010635956.1 8-oxo-dGTP diphosphatase MutT -
  NRZ31_RS12260 (NRZ31_12260) - 2657259..2658437 (-) 1179 WP_267996199.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45468.58 Da        Isoelectric Point: 9.8834

>NTDB_id=716474 NRZ31_RS12230 WP_010635960.1 2653042..2654283(+) (pilC) [Aeromonas dhakensis strain BC15]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGARIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=716474 NRZ31_RS12230 WP_010635960.1 2653042..2654283(+) (pilC) [Aeromonas dhakensis strain BC15]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAGCAGGGCGTCAACGTCACTA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGTGGCGCCAGGATCAAGCCGATGGACATTGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAAACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGTTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTTGCCATCTTCCTCTACGTGCGAGCCTGGCGTGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCTGGTGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCTGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATTCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

48.241

96.368

0.465
  pilC Vibrio campbellii strain DS40M4

47.607

96.126

0.458
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

38

96.852

0.368