Detailed information NTG0716475

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NRZ31_RS12235
• Genome accession: NZ_CP102365
• Coordinates: 2654306..2655178 (+)
• Length: 290 a.a.
• NCBI ID: WP_017766419.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain BC15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2649306..2660178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRZ31_RS12215 (NRZ31_12215)	nadC	2649582..2650439 (+)	858	WP_010635962.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NRZ31_RS12220 (NRZ31_12220)	tapA	2650761..2651213 (+)	453	WP_005305643.1	type IVa pilus major pilin TapA	-
NRZ31_RS12225 (NRZ31_12225)	pilB	2651220..2652926 (+)	1707	WP_005305646.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRZ31_RS12230 (NRZ31_12230)	pilC	2653042..2654283 (+)	1242	WP_010635960.1	type II secretion system F family protein	Machinery gene
NRZ31_RS12235 (NRZ31_12235)	pilD	2654306..2655178 (+)	873	WP_017766419.1	prepilin peptidase	Machinery gene
NRZ31_RS12240 (NRZ31_12240)	coaE	2655198..2655812 (+)	615	WP_017766418.1	dephospho-CoA kinase	-
NRZ31_RS12245 (NRZ31_12245)	zapD	2655850..2656572 (+)	723	WP_026141277.1	cell division protein ZapD	-
NRZ31_RS12250 (NRZ31_12250)	yacG	2656582..2656776 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NRZ31_RS12255 (NRZ31_12255)	mutT	2656837..2657250 (-)	414	WP_010635956.1	8-oxo-dGTP diphosphatase MutT	-
NRZ31_RS12260 (NRZ31_12260)	-	2657259..2658437 (-)	1179	WP_267996199.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32508.92 Da
• Isoelectric Point: 6.7410

>NTDB_id=716475 NRZ31_RS12235 WP_017766419.1 2654306..2655178(+) (pilD) [Aeromonas dhakensis strain BC15]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECLAPISARYPLVELLTALLSLVVAATFPPSWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=716475 NRZ31_RS12235 WP_017766419.1 2654306..2655178(+) (pilD) [Aeromonas dhakensis strain BC15]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTAGTATTCCTCTTCTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGACGTTGCCGTGAATGCCTGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAACTGCTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGAGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTCTCCTCGCTG
GTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCACCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACATTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	58.478	99.655	0.583
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462