Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRL37_RS05615 Genome accession   NZ_CP102328
Coordinates   1187910..1189127 (-) Length   405 a.a.
NCBI ID   WP_268194239.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain BC12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1182910..1194127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRL37_RS05570 (NRL37_05570) - 1183314..1183487 (-) 174 WP_044406847.1 DUF3094 family protein -
  NRL37_RS05575 (NRL37_05575) - 1183567..1184193 (-) 627 WP_044406964.1 DUF1780 domain-containing protein -
  NRL37_RS05580 (NRL37_05580) - 1184313..1184738 (+) 426 WP_268194233.1 GNAT family N-acetyltransferase -
  NRL37_RS05585 (NRL37_05585) - 1184735..1185211 (+) 477 WP_268194234.1 FAD/FMN-containing dehydrogenase -
  NRL37_RS05590 (NRL37_05590) - 1185208..1185894 (+) 687 WP_268194235.1 energy-coupling factor ABC transporter permease -
  NRL37_RS05595 (NRL37_05595) - 1186005..1186220 (+) 216 WP_268194236.1 hypothetical protein -
  NRL37_RS05600 (NRL37_05600) yacG 1186233..1186430 (-) 198 WP_044406857.1 DNA gyrase inhibitor YacG -
  NRL37_RS05605 (NRL37_05605) coaE 1186427..1187038 (-) 612 WP_268194237.1 dephospho-CoA kinase -
  NRL37_RS05610 (NRL37_05610) pilD 1187035..1187907 (-) 873 WP_268194238.1 prepilin peptidase Machinery gene
  NRL37_RS05615 (NRL37_05615) pilC 1187910..1189127 (-) 1218 WP_268194239.1 type II secretion system F family protein Machinery gene
  NRL37_RS05620 (NRL37_05620) pilB 1189131..1190834 (-) 1704 WP_268194240.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NRL37_RS05625 (NRL37_05625) - 1191057..1191554 (+) 498 WP_268194241.1 pilin -
  NRL37_RS05630 (NRL37_05630) - 1191664..1193346 (+) 1683 WP_268194242.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44164.10 Da        Isoelectric Point: 9.8704

>NTDB_id=716194 NRL37_RS05615 WP_268194239.1 1187910..1189127(-) (pilC) [Metapseudomonas otitidis strain BC12]
MAEKAVKTSVFKWEGTDKKGAKVTGELNGINPSLVKAQLRKQGINPLKVRKKAVSLFSSGKKIKPLDIALFTRQMATMMK
SGVPLLQSFDIIGEGFDNPNMRKLVDDVKQDVAAGNSFAASLRKKPAYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKSKIKKAMNYPIAVILVAVIVSAILLIKVVPQFQSVFANFGAELPAFTLMVIGLSETLQEWWYIILILLFGVFFGLK
KAHQKSESFRNWLDRFVLKLPIVGDILYKAVVARFARTLATTFAAGVPLVEALDSVAGATGNIVFKNAVVKIKQDVSSGM
QLNFSMRTAGVFPTMAVQMAAIGEESGSLDLMLDKVATYYEQEVDNAVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=716194 NRL37_RS05615 WP_268194239.1 1187910..1189127(-) (pilC) [Metapseudomonas otitidis strain BC12]
ATGGCGGAAAAAGCAGTAAAAACGAGTGTGTTCAAGTGGGAAGGCACTGACAAAAAAGGAGCCAAGGTCACCGGCGAGCT
CAATGGTATCAACCCTTCGCTGGTCAAGGCCCAACTTCGTAAACAGGGCATCAATCCGCTAAAGGTGCGAAAAAAAGCAG
TATCGCTTTTTAGCTCAGGAAAAAAGATCAAGCCCCTGGATATTGCACTTTTCACTCGTCAGATGGCCACCATGATGAAA
TCAGGTGTTCCACTTCTACAATCCTTTGACATTATTGGCGAAGGATTTGACAACCCGAACATGCGCAAGCTGGTTGACGA
TGTCAAACAAGATGTTGCAGCGGGTAACAGTTTCGCTGCGTCTCTAAGAAAGAAGCCCGCTTACTTTGATGACCTCTATT
GCAACTTGGTCGACTCAGGCGAACAGTCTGGTGCACTCGAAACACTTCTTGATCGAGTCGCCACTTATAAAGAGAAAACC
GAGGCTCTAAAATCCAAAATCAAAAAAGCGATGAACTACCCTATTGCGGTTATTCTAGTCGCAGTTATAGTGTCCGCTAT
TTTGCTAATAAAAGTCGTCCCTCAATTCCAGTCTGTTTTCGCAAATTTCGGCGCGGAACTACCTGCATTCACGCTAATGG
TCATCGGCCTTTCCGAAACCCTGCAGGAATGGTGGTATATAATACTGATTCTACTTTTCGGCGTTTTCTTCGGCCTAAAA
AAAGCCCACCAGAAATCTGAATCATTTCGCAACTGGCTAGACAGATTTGTCCTCAAACTCCCCATCGTGGGGGATATCCT
CTATAAGGCCGTAGTCGCTCGTTTCGCGAGAACCCTTGCAACTACTTTCGCTGCTGGCGTGCCTTTGGTTGAGGCCCTAG
ACTCCGTTGCAGGCGCAACTGGCAACATTGTATTCAAAAATGCAGTCGTCAAAATCAAGCAGGATGTCTCATCCGGCATG
CAGCTAAACTTTTCTATGCGCACAGCTGGTGTATTTCCAACTATGGCAGTGCAGATGGCTGCAATTGGTGAGGAGTCAGG
CTCGCTGGATCTCATGCTAGACAAAGTCGCAACATACTACGAGCAGGAAGTCGACAACGCTGTTGATGGCCTGACTTCGT
TAATGGAGCCGCTGATCATGTCTGTCTTGGGTGTTCTGGTCGGCGGTCTCATCATCGCCATGTACCTCCCTATCTTCCAA
CTCGGCTCCGTAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.728

100

0.817
  pilC Acinetobacter baylyi ADP1

60.099

100

0.602
  pilC Acinetobacter baumannii D1279779

59.506

100

0.595
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilG Neisseria meningitidis 44/76-A

43.532

99.259

0.432
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Vibrio campbellii strain DS40M4

41.667

97.778

0.407
  pilC Thermus thermophilus HB27

37.157

99.012

0.368