Detailed information NTG0716193

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NRL37_RS05610
• Genome accession: NZ_CP102328
• Coordinates: 1187035..1187907 (-)
• Length: 290 a.a.
• NCBI ID: WP_268194238.1
• Uniprot ID: -
• Organism: Metapseudomonas otitidis strain BC12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1182035..1192907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRL37_RS05570 (NRL37_05570)	-	1183314..1183487 (-)	174	WP_044406847.1	DUF3094 family protein	-
NRL37_RS05575 (NRL37_05575)	-	1183567..1184193 (-)	627	WP_044406964.1	DUF1780 domain-containing protein	-
NRL37_RS05580 (NRL37_05580)	-	1184313..1184738 (+)	426	WP_268194233.1	GNAT family N-acetyltransferase	-
NRL37_RS05585 (NRL37_05585)	-	1184735..1185211 (+)	477	WP_268194234.1	FAD/FMN-containing dehydrogenase	-
NRL37_RS05590 (NRL37_05590)	-	1185208..1185894 (+)	687	WP_268194235.1	energy-coupling factor ABC transporter permease	-
NRL37_RS05595 (NRL37_05595)	-	1186005..1186220 (+)	216	WP_268194236.1	hypothetical protein	-
NRL37_RS05600 (NRL37_05600)	yacG	1186233..1186430 (-)	198	WP_044406857.1	DNA gyrase inhibitor YacG	-
NRL37_RS05605 (NRL37_05605)	coaE	1186427..1187038 (-)	612	WP_268194237.1	dephospho-CoA kinase	-
NRL37_RS05610 (NRL37_05610)	pilD	1187035..1187907 (-)	873	WP_268194238.1	prepilin peptidase	Machinery gene
NRL37_RS05615 (NRL37_05615)	pilC	1187910..1189127 (-)	1218	WP_268194239.1	type II secretion system F family protein	Machinery gene
NRL37_RS05620 (NRL37_05620)	pilB	1189131..1190834 (-)	1704	WP_268194240.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NRL37_RS05625 (NRL37_05625)	-	1191057..1191554 (+)	498	WP_268194241.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31927.95 Da
• Isoelectric Point: 6.4671

>NTDB_id=716193 NRL37_RS05610 WP_268194238.1 1187035..1187907(-) (pilD) [Metapseudomonas otitidis strain BC12]
MPLVDFLAGNLPAFVFCVFLLGLLVGSFLNVVIYRLPVMMFRDWKIQAREALELPQEPPGETFNLVLPNSRCPHCQHEIK
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDIDHQLLPDSLV
LPLLWLGLIVNSQGLFTGLEDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=716193 NRL37_RS05610 WP_268194238.1 1187035..1187907(-) (pilD) [Metapseudomonas otitidis strain BC12]
ATGCCTCTTGTTGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCGTATTCCTCCTCGGCCTCTTGGTCGGCAG
CTTCCTCAATGTGGTCATTTACCGTTTGCCGGTGATGATGTTCCGCGACTGGAAGATCCAGGCCCGCGAGGCCCTGGAGT
TACCGCAGGAGCCGCCGGGCGAGACGTTCAACCTGGTTCTGCCGAACTCCCGCTGCCCCCATTGCCAGCACGAGATCAAG
GCCTGGGAGAACATCCCGGTGGTGAGCTGGCTGGCCCTGGGCGGCAAGTGTTCGTCGTGCAAGGCACCGATCAAGAAGCG
CTATCCGCTGGTGGAGCTGGCCTGTGGGCTGCTTTCCGCCTACGTCGCCTGGCACTTCGGTTTCACCTGGCAGGCGGGTG
CCTTTCTGGTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGACATCGACCACCAGCTGCTCCCCGACTCCCTGGTG
TTGCCGCTGCTCTGGCTTGGGCTGATCGTCAACAGCCAGGGCCTGTTCACCGGGCTGGAGGATGCCCTCTGGGGCGCGGT
GGGCGGCTACCTGAGCCTGTGGAGCGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTTCCGCTGACCATCCTGCTGTCGTCCCTGGTCGGT
GCGGTACTGGGGATCATCATTCTCAAGCTGCGCGATGCTGACAGCGGCACGCCCATTCCCTTCGGCCCCTACCTGGCGAT
TGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.465	97.931	0.514
pilD	Vibrio cholerae strain A1552	55.431	92.069	0.51
pilD	Acinetobacter nosocomialis M2	51.761	97.931	0.507
pilD	Vibrio campbellii strain DS40M4	53.114	94.138	0.5
pilD	Neisseria gonorrhoeae MS11	51.724	90	0.466