Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRL00_RS19020 Genome accession   NZ_CP102327
Coordinates   4153197..4154438 (+) Length   413 a.a.
NCBI ID   WP_005305649.1    Uniprot ID   K1JJY1
Organism   Aeromonas dhakensis strain BC05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4148197..4159438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRL00_RS18995 (NRL00_18995) ampD 4148590..4149162 (-) 573 WP_017766423.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NRL00_RS19000 (NRL00_19000) - 4149286..4149756 (+) 471 WP_095591545.1 TIGR02281 family clan AA aspartic protease -
  NRL00_RS19005 (NRL00_19005) nadC 4149761..4150618 (+) 858 WP_017779054.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NRL00_RS19010 (NRL00_19010) - 4150940..4151371 (+) 432 WP_042049886.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NRL00_RS19015 (NRL00_19015) pilB 4151375..4153081 (+) 1707 WP_042049838.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NRL00_RS19020 (NRL00_19020) pilC 4153197..4154438 (+) 1242 WP_005305649.1 type II secretion system F family protein Machinery gene
  NRL00_RS19025 (NRL00_19025) pilD 4154461..4155333 (+) 873 WP_268009746.1 prepilin peptidase Machinery gene
  NRL00_RS19030 (NRL00_19030) coaE 4155353..4155967 (+) 615 WP_268009747.1 dephospho-CoA kinase -
  NRL00_RS19035 (NRL00_19035) zapD 4156005..4156727 (+) 723 WP_025202564.1 cell division protein ZapD -
  NRL00_RS19040 (NRL00_19040) yacG 4156737..4156931 (+) 195 WP_017782442.1 DNA gyrase inhibitor YacG -
  NRL00_RS19045 (NRL00_19045) mutT 4156992..4157405 (-) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  NRL00_RS19050 (NRL00_19050) - 4157414..4158592 (-) 1179 WP_124249705.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45440.57 Da        Isoelectric Point: 9.8734

>NTDB_id=716176 NRL00_RS19020 WP_005305649.1 4153197..4154438(+) (pilC) [Aeromonas dhakensis strain BC05]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=716176 NRL00_RS19020 WP_005305649.1 4153197..4154438(+) (pilC) [Aeromonas dhakensis strain BC05]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGTCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATTGCCGTCGTCTCTCGC
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
CGCCATTGTCGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGTGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGTACCCTCTCCACCACCTTTTCCGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1JJY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

95.884

0.552
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

47.355

96.126

0.455
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368