Detailed information NTG0716177

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NRL00_RS19025
• Genome accession: NZ_CP102327
• Coordinates: 4154461..4155333 (+)
• Length: 290 a.a.
• NCBI ID: WP_268009746.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain BC05
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4149461..4160333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRL00_RS19005 (NRL00_19005)	nadC	4149761..4150618 (+)	858	WP_017779054.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NRL00_RS19010 (NRL00_19010)	-	4150940..4151371 (+)	432	WP_042049886.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NRL00_RS19015 (NRL00_19015)	pilB	4151375..4153081 (+)	1707	WP_042049838.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRL00_RS19020 (NRL00_19020)	pilC	4153197..4154438 (+)	1242	WP_005305649.1	type II secretion system F family protein	Machinery gene
NRL00_RS19025 (NRL00_19025)	pilD	4154461..4155333 (+)	873	WP_268009746.1	prepilin peptidase	Machinery gene
NRL00_RS19030 (NRL00_19030)	coaE	4155353..4155967 (+)	615	WP_268009747.1	dephospho-CoA kinase	-
NRL00_RS19035 (NRL00_19035)	zapD	4156005..4156727 (+)	723	WP_025202564.1	cell division protein ZapD	-
NRL00_RS19040 (NRL00_19040)	yacG	4156737..4156931 (+)	195	WP_017782442.1	DNA gyrase inhibitor YacG	-
NRL00_RS19045 (NRL00_19045)	mutT	4156992..4157405 (-)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
NRL00_RS19050 (NRL00_19050)	-	4157414..4158592 (-)	1179	WP_124249705.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32559.94 Da
• Isoelectric Point: 6.7410

>NTDB_id=716177 NRL00_RS19025 WP_268009746.1 4154461..4155333(+) (pilD) [Aeromonas dhakensis strain BC05]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWMLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLFTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=716177 NRL00_RS19025 WP_268009746.1 4154461..4155333(+) (pilD) [Aeromonas dhakensis strain BC05]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAGGAACGCTACAACCTGATGGTGCCACGTTCCGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGTCGTGAGTGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGATGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAA
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGTTCACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTCTCCTCCCTG
GTAGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCACCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.538	98.621	0.607
pilD	Vibrio campbellii strain DS40M4	57.785	99.655	0.576
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459