Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRK98_RS20940 Genome accession   NZ_CP102325
Coordinates   4599292..4600533 (-) Length   413 a.a.
NCBI ID   WP_005305649.1    Uniprot ID   K1JJY1
Organism   Aeromonas dhakensis strain BC03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4594292..4605533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK98_RS20910 (NRK98_20910) - 4595138..4596316 (+) 1179 WP_268027960.1 tetratricopeptide repeat protein -
  NRK98_RS20915 (NRK98_20915) mutT 4596325..4596738 (+) 414 WP_010635956.1 8-oxo-dGTP diphosphatase MutT -
  NRK98_RS20920 (NRK98_20920) yacG 4596799..4596993 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  NRK98_RS20925 (NRK98_20925) zapD 4597003..4597725 (-) 723 WP_268027961.1 cell division protein ZapD -
  NRK98_RS20930 (NRK98_20930) coaE 4597763..4598377 (-) 615 WP_017766418.1 dephospho-CoA kinase -
  NRK98_RS20935 (NRK98_20935) pilD 4598397..4599269 (-) 873 WP_268027962.1 prepilin peptidase Machinery gene
  NRK98_RS20940 (NRK98_20940) pilC 4599292..4600533 (-) 1242 WP_005305649.1 type II secretion system F family protein Machinery gene
  NRK98_RS20945 (NRK98_20945) pilB 4600649..4602364 (-) 1716 WP_219326273.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NRK98_RS20950 (NRK98_20950) - 4602355..4602795 (-) 441 WP_082969962.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NRK98_RS20955 (NRK98_20955) nadC 4603117..4603974 (-) 858 WP_268027963.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NRK98_RS20960 (NRK98_20960) - 4603979..4604449 (-) 471 WP_043171614.1 TIGR02281 family clan AA aspartic protease -
  NRK98_RS20965 (NRK98_20965) ampD 4604573..4605145 (+) 573 WP_208200766.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45440.57 Da        Isoelectric Point: 9.8734

>NTDB_id=716124 NRK98_RS20940 WP_005305649.1 4599292..4600533(-) (pilC) [Aeromonas dhakensis strain BC03]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=716124 NRK98_RS20940 WP_005305649.1 4599292..4600533(-) (pilC) [Aeromonas dhakensis strain BC03]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATTGCCGTCGTCTCCCGT
CAGATCACCACCATGCTGTCAGCTGGTGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAAAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGAACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAAACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGCGCCTCGCAAAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTAGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1JJY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

95.884

0.552
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

47.355

96.126

0.455
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368