Detailed information NTG0716123

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NRK98_RS20935
• Genome accession: NZ_CP102325
• Coordinates: 4598397..4599269 (-)
• Length: 290 a.a.
• NCBI ID: WP_268027962.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain BC03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4593397..4604269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRK98_RS20910 (NRK98_20910)	-	4595138..4596316 (+)	1179	WP_268027960.1	tetratricopeptide repeat protein	-
NRK98_RS20915 (NRK98_20915)	mutT	4596325..4596738 (+)	414	WP_010635956.1	8-oxo-dGTP diphosphatase MutT	-
NRK98_RS20920 (NRK98_20920)	yacG	4596799..4596993 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NRK98_RS20925 (NRK98_20925)	zapD	4597003..4597725 (-)	723	WP_268027961.1	cell division protein ZapD	-
NRK98_RS20930 (NRK98_20930)	coaE	4597763..4598377 (-)	615	WP_017766418.1	dephospho-CoA kinase	-
NRK98_RS20935 (NRK98_20935)	pilD	4598397..4599269 (-)	873	WP_268027962.1	prepilin peptidase	Machinery gene
NRK98_RS20940 (NRK98_20940)	pilC	4599292..4600533 (-)	1242	WP_005305649.1	type II secretion system F family protein	Machinery gene
NRK98_RS20945 (NRK98_20945)	pilB	4600649..4602364 (-)	1716	WP_219326273.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRK98_RS20950 (NRK98_20950)	-	4602355..4602795 (-)	441	WP_082969962.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NRK98_RS20955 (NRK98_20955)	nadC	4603117..4603974 (-)	858	WP_268027963.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32502.83 Da
• Isoelectric Point: 7.0271

>NTDB_id=716123 NRK98_RS20935 WP_268027962.1 4598397..4599269(-) (pilD) [Aeromonas dhakensis strain BC03]
MLLITDVFHSLPWLYSSLVFLFSLMIGSFLNVVIHRLPIMLEREWRAEYLSYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=716123 NRK98_RS20935 WP_268027962.1 4598397..4599269(-) (pilD) [Aeromonas dhakensis strain BC03]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTCTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCGGGCCGAATACCTCAGCTATTTCA
ATCCAGAGACACAACCGCAGCAGGAGGAACGCTACAACCTGATGGTGCCACGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGTTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCACTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTATTGCTGCTCTCCTCCCTG
GTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCACCATCAGAACAAACCCATCCCCTTCGGGCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	62.238	98.621	0.614
pilD	Vibrio campbellii strain DS40M4	56.993	98.621	0.562
pilD	Acinetobacter baumannii D1279779	55.97	92.414	0.517
pilD	Acinetobacter nosocomialis M2	55.97	92.414	0.517
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462