Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY64_RS25305 Genome accession   NZ_CP102177
Coordinates   5695126..5696343 (+) Length   405 a.a.
NCBI ID   WP_265068284.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain B21-055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5690126..5701343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY64_RS25285 (LOY64_25300) - 5691526..5691822 (+) 297 WP_053192127.1 DUF2845 domain-containing protein -
  LOY64_RS25290 (LOY64_25305) - 5692126..5692479 (-) 354 WP_024779584.1 BON domain-containing protein -
  LOY64_RS25295 (LOY64_25310) - 5692777..5693199 (-) 423 WP_024779583.1 pilin -
  LOY64_RS25300 (LOY64_25315) pilB 5693423..5695123 (+) 1701 WP_265068283.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY64_RS25305 (LOY64_25320) pilC 5695126..5696343 (+) 1218 WP_265068284.1 type II secretion system F family protein Machinery gene
  LOY64_RS25310 (LOY64_25325) pilD 5696345..5697214 (+) 870 WP_265068285.1 A24 family peptidase Machinery gene
  LOY64_RS25315 (LOY64_25330) coaE 5697225..5697848 (+) 624 WP_024779579.1 dephospho-CoA kinase -
  LOY64_RS25320 (LOY64_25335) yacG 5697845..5698051 (+) 207 WP_024779578.1 DNA gyrase inhibitor YacG -
  LOY64_RS25325 (LOY64_25340) - 5698056..5698271 (-) 216 WP_024779577.1 hypothetical protein -
  LOY64_RS25330 (LOY64_25345) - 5698335..5699021 (-) 687 WP_024779576.1 energy-coupling factor ABC transporter permease -
  LOY64_RS25335 (LOY64_25350) - 5699356..5699982 (+) 627 WP_024779575.1 DUF1780 domain-containing protein -
  LOY64_RS25340 (LOY64_25355) - 5700081..5700254 (+) 174 WP_003185543.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43900.51 Da        Isoelectric Point: 10.0789

>NTDB_id=715275 LOY64_RS25305 WP_265068284.1 5695126..5696343(+) (pilC) [Pseudomonas corrugata strain B21-055]
MAAKAVKTDTYTWEGKDRKGAKMSGELTGQSPALVKAQLRKQGINPGKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDEVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPAAVVLVAAVVTGILLVKVVPQFESVFSGFGAKLPAFTLMVIGLSEFMQESWWLLLGGAVGTFFGVK
YALKRSQGFRDWRDKWLLKLPLVGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVAGFYEAEVDNLVGNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=715275 LOY64_RS25305 WP_265068284.1 5695126..5696343(+) (pilC) [Pseudomonas corrugata strain B21-055]
ATGGCGGCCAAGGCAGTAAAAACCGATACCTATACCTGGGAAGGCAAAGACCGCAAGGGCGCGAAGATGTCCGGCGAGCT
GACCGGCCAGAGCCCGGCCCTGGTCAAGGCGCAATTGCGCAAGCAAGGCATCAACCCGGGCAAGGTCCGCAAGAAATCCA
CCTCGATATTCAGCAAGGGCAAACGCATCAAGCCGCTGGATATCGCCCTCTTCACCCGCCAGATGGCGACGATGCTCAAG
GCAGGCGTCCCCCTGCTGCAAGCCTTCGACATCATTGGCGAAGGCTTCGACAATGCCAACATGCGCAAGCTGGTAGACGA
GGTGAAGCAGGAGGTCGCCGCCGGCAACAGTTTCGCCGCGTCGTTGCGCAAGTGCCCGCAATACTTCGACGAGTTGTACT
GCAACCTGGTGGACGCGGGTGAACAGGCCGGTGCCCTGGACACCTTGCTGGATCGGGTCGCGACCTACAAGGAGAAGAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTATCCGGCGGCCGTCGTGCTCGTAGCGGCAGTCGTCACCGGCAT
TCTACTGGTCAAGGTGGTGCCGCAGTTCGAATCGGTGTTCTCCGGATTCGGCGCGAAACTGCCTGCGTTCACCCTGATGG
TCATCGGCCTGTCGGAGTTCATGCAAGAGTCGTGGTGGCTGCTGCTGGGCGGGGCTGTGGGCACATTTTTTGGCGTGAAG
TATGCGCTCAAGCGCTCCCAGGGTTTTCGTGACTGGCGTGATAAATGGCTGCTCAAGCTGCCGCTGGTGGGCACCCTGAT
GTACAAATCCGCGGTAGCCCGCTACGCCCGGACACTGTCCACCACCTTCGCCGCCGGCGTGCCATTGGTGGAGGCTCTGG
ACTCTGTCTCCGGCGCCACCGGCAACGTGGTGTTCAAACGTGCGGTCCAGCGCATCCGGCAAGATGTCTCGACCGGTATG
CAGTTGAATTTTTCCATGCGTGCCTCAGGCATATTCCCGAACCTGGCGATCCAGATGACCGCCATCGGCGAGGAATCCGG
AGCACTGGACGATATGCTCGACAAGGTGGCAGGTTTCTATGAGGCCGAGGTCGACAACCTGGTGGGCAATCTCACCAGTC
TGATGGAACCGTTCATCATGGTGGTCCTGGGGGTGGTTGTCGGCGGTCTTGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.074

100

0.741
  pilC Acinetobacter baylyi ADP1

58.637

100

0.595
  pilC Acinetobacter baumannii D1279779

58.168

99.753

0.58
  pilC Legionella pneumophila strain ERS1305867

54.408

98.025

0.533
  pilC Vibrio campbellii strain DS40M4

43.489

100

0.437
  pilG Neisseria gonorrhoeae MS11

42.469

100

0.425
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilG Neisseria meningitidis 44/76-A

42.222

100

0.422
  pilC Thermus thermophilus HB27

38.5

98.765

0.38