Detailed information NTG0715276

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY64_RS25310
• Genome accession: NZ_CP102177
• Coordinates: 5696345..5697214 (+)
• Length: 289 a.a.
• NCBI ID: WP_265068285.1
• Uniprot ID: -
• Organism: Pseudomonas corrugata strain B21-055
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5691345..5702214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY64_RS25285 (LOY64_25300)	-	5691526..5691822 (+)	297	WP_053192127.1	DUF2845 domain-containing protein	-
LOY64_RS25290 (LOY64_25305)	-	5692126..5692479 (-)	354	WP_024779584.1	BON domain-containing protein	-
LOY64_RS25295 (LOY64_25310)	-	5692777..5693199 (-)	423	WP_024779583.1	pilin	-
LOY64_RS25300 (LOY64_25315)	pilB	5693423..5695123 (+)	1701	WP_265068283.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY64_RS25305 (LOY64_25320)	pilC	5695126..5696343 (+)	1218	WP_265068284.1	type II secretion system F family protein	Machinery gene
LOY64_RS25310 (LOY64_25325)	pilD	5696345..5697214 (+)	870	WP_265068285.1	A24 family peptidase	Machinery gene
LOY64_RS25315 (LOY64_25330)	coaE	5697225..5697848 (+)	624	WP_024779579.1	dephospho-CoA kinase	-
LOY64_RS25320 (LOY64_25335)	yacG	5697845..5698051 (+)	207	WP_024779578.1	DNA gyrase inhibitor YacG	-
LOY64_RS25325 (LOY64_25340)	-	5698056..5698271 (-)	216	WP_024779577.1	hypothetical protein	-
LOY64_RS25330 (LOY64_25345)	-	5698335..5699021 (-)	687	WP_024779576.1	energy-coupling factor ABC transporter permease	-
LOY64_RS25335 (LOY64_25350)	-	5699356..5699982 (+)	627	WP_024779575.1	DUF1780 domain-containing protein	-
LOY64_RS25340 (LOY64_25355)	-	5700081..5700254 (+)	174	WP_003185543.1	DUF3094 domain-containing protein	-
LOY64_RS25345 (LOY64_25360)	-	5700336..5701634 (+)	1299	WP_024779574.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31750.90 Da
• Isoelectric Point: 8.6210

>NTDB_id=715276 LOY64_RS25310 WP_265068285.1 5696345..5697214(+) (pilD) [Pseudomonas corrugata strain B21-055]
MPLTGFFILYPLAFVLAALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAETPGPAYNLMLPHSHCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACAALSAFVAWHFGFGWQAALVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAVWGAVAGYLALWSVFWIFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVVVLRMRSAPASTQIPFGPYLAIAGWIALLWGGQITDFYWHSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=715276 LOY64_RS25310 WP_265068285.1 5696345..5697214(+) (pilD) [Pseudomonas corrugata strain B21-055]
ATGCCCCTGACCGGATTCTTCATCCTTTATCCCCTGGCCTTTGTGCTGGCGGCGCTATTGCTCGGGCTGATTGTCGGCAG
CTTTCTCAATGTGCTGGTGTGGCGCCTGCCCAAGATGCTCACTCGCGAATGGCGGCTGCAAGCCCACGACCTGCTGGGCC
TGCCCGCCGAAACACCCGGCCCGGCCTACAACCTGATGCTGCCTCACTCCCATTGCCCTCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATCCCATTGCTCAGTTACCTCGCACTGCGTGGTCGCTGTTCCAGTTGCGCGGCCCCCATTGGGCGACG
GTATCCCCTGACCGAGCTGGCCTGCGCTGCGCTGTCGGCCTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCGC
TGGTGATGGTCCTAAGCTGGGGCCTGCTGGGCATGAGTCTGATCGATGCGGAGCATCAGCTACTGCCCGATACACTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTCTCGTTGAACCAGGCGGTATGGGGAGCGGT
GGCCGGCTATCTCGCGCTGTGGTCGGTATTCTGGATCTTCAAGTTGATCACCGGCAAGGAAGGCATGGGCTACGGAGACT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGCGGCTGGCAAATTCTGCCGCTGACGCTGCTGCTATCGTCGCTGGTGGGC
GCCGTGATCGGAGTCGTTGTGTTGCGCATGCGAAGTGCCCCGGCTTCGACGCAGATCCCCTTCGGGCCCTATTTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCACTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.901	97.578	0.526
pilD	Vibrio campbellii strain DS40M4	50.53	97.924	0.495
pilD	Neisseria gonorrhoeae MS11	46.69	99.308	0.464
pilD	Acinetobacter baumannii D1279779	46.831	98.27	0.46
pilD	Acinetobacter nosocomialis M2	46.831	98.27	0.46