Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   M0P28_RS05570 Genome accession   NZ_CP116958
Coordinates   1074315..1075385 (+) Length   356 a.a.
NCBI ID   WP_003064732.1    Uniprot ID   A0A1H9NID7
Organism   Streptococcus pasteurianus strain WUSP074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069315..1080385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS05550 (M0P28_05550) - 1069773..1069976 (+) 204 WP_002347229.1 excisionase -
  M0P28_RS05555 (M0P28_05555) - 1070066..1071157 (+) 1092 Protein_1034 tyrosine-type recombinase/integrase -
  M0P28_RS05560 (M0P28_05560) - 1071422..1072764 (+) 1343 Protein_1035 IS3 family transposase -
  M0P28_RS05570 (M0P28_05570) xerS 1074315..1075385 (+) 1071 WP_003064732.1 tyrosine recombinase XerS Machinery gene
  M0P28_RS05575 (M0P28_05575) - 1075492..1076172 (-) 681 WP_013851817.1 LexA family transcriptional regulator -
  M0P28_RS05580 (M0P28_05580) - 1076256..1077203 (-) 948 WP_048791145.1 sensor histidine kinase -
  M0P28_RS05585 (M0P28_05585) braR 1077200..1077862 (-) 663 WP_172456417.1 response regulator transcription factor Regulator
  M0P28_RS05590 (M0P28_05590) - 1077950..1079929 (-) 1980 WP_013851819.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41334.41 Da        Isoelectric Point: 9.4174

>NTDB_id=715274 M0P28_RS05570 WP_003064732.1 1074315..1075385(+) (xerS) [Streptococcus pasteurianus strain WUSP074]
MKREKLLEKIDELKEIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGISDVTKIADVELTTLEHLSKKDME
SFILYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGEPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIDYIDTEYQNKLSHRALSSFQKNKERDLALIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNVANFAKPYLEAYLQIRAPRYKAEKQDQALFLTEYRGVPNRIDASSVEKLVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=715274 M0P28_RS05570 WP_003064732.1 1074315..1075385(+) (xerS) [Streptococcus pasteurianus strain WUSP074]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAACTTAAAGAAATAATGCCTTGGTACGTCTTGGACTATTACCAATC
AAAACTTTCAGTTCCTTATAGCTTCACAACTTTATATGAATACTTAAAAGAATATCGCCGATTTTTCGAATGGCTTTTGG
ATTCTGGAATTTCAGATGTTACTAAAATTGCTGATGTTGAGTTAACAACCCTGGAACATCTTTCTAAAAAAGACATGGAA
TCATTCATCCTTTATCTGCGTGAACGTCCTTCTTTGAACACTTATTCAACAAAACAAGGTGTCTCACAAACAACGATTAA
TCGGACGTTATCAGCACTTTCAAGCCTGTTTAAATACCTAACAGAAGAGGTCGAAGATGAAAATGGTGAGCCCTACTTCT
ATCGAAATGTCATGAAAAAAATCGCTACTAAGAAGAAAAAAGAAACGCTGGCAGCTCGAGCTGAAAATATAAAAGGCAAA
CTTTTCCTAGGTGACGAGACCATGGCATTTATCGACTATATCGATACAGAGTATCAAAATAAGCTCTCTCACCGCGCCCT
CTCCTCCTTCCAAAAGAATAAGGAGCGTGATTTAGCGCTTATTGCTCTTCTGCTTGCCTCTGGTGTCCGTCTTTCAGAAG
CTGTTAATCTTGATTTGAAAGACTTAAACCTTAATATGATGGTTATCGAAGTCACTCGTAAAGGTGGAAAACGTGATTCT
GTCAATGTTGCTAACTTTGCTAAGCCTTATTTAGAAGCTTATTTACAAATCAGAGCGCCTCGCTATAAGGCGGAAAAACA
AGACCAAGCTCTCTTTTTAACAGAATATCGCGGTGTTCCTAACCGTATTGATGCTTCAAGCGTTGAAAAGTTAGTTGCTA
AATATTCTCAAGATTTCAAAGTTCGTGTAACACCCCATAAACTGCGCCACACACTTGCAACACGTCTTTACGATGCTACT
AAATCACAAGTCCTAGTTAGCCACCAATTAGGACATGCCAGCACACAAGTTACCGACTTATACACCCATATCGTCAACGA
CGAACAAAAAAACGCTTTAGATAAGCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(191-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H9NID7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834