Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NQ200_RS18675 Genome accession   NZ_CP102172
Coordinates   4099643..4100884 (+) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida subsp. masoucida strain wx3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4094643..4105884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ200_RS18650 ampD 4094986..4095558 (-) 573 WP_113720816.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NQ200_RS18655 - 4095708..4096178 (+) 471 WP_309265796.1 retropepsin-like aspartic protease -
  NQ200_RS18660 nadC 4096183..4097040 (+) 858 WP_282683318.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NQ200_RS18665 - 4097376..4097801 (+) 426 WP_309265797.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NQ200_RS18670 pilB 4097808..4099514 (+) 1707 WP_096119753.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NQ200_RS18675 pilC 4099643..4100884 (+) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  NQ200_RS18680 pilD 4100948..4101823 (+) 876 WP_125729778.1 A24 family peptidase Machinery gene
  NQ200_RS18685 coaE 4101843..4102457 (+) 615 WP_309265798.1 dephospho-CoA kinase -
  NQ200_RS18690 zapD 4102495..4103217 (+) 723 WP_005314166.1 cell division protein ZapD -
  NQ200_RS18695 yacG 4103227..4103421 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  NQ200_RS18700 mutT 4103499..4103906 (-) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=715155 NQ200_RS18675 WP_059113460.1 4099643..4100884(+) (pilC) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=715155 NQ200_RS18675 WP_059113460.1 4099643..4100884(+) (pilC) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTGCAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
GATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCGGGCGAGCAATCCGGCGCCCTGGAAACAATCTACGATCGCATC
GCCACCTATAGAGAAAAATCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATTTTCAAGAGCTTTGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGAATTGGTGGTATGTGATTTTTGGCGGAATAGGG
CTTGGCATTTTCCTTTATGTACGAGCATGGCGCGCATCCCAGAAAGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTAGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATTAACGTGGCCATGCGCACTGTGGATCTCTTCCCCGATATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGTATGGTCGTTGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366