Detailed information NTG0715156

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NQ200_RS18680
• Genome accession: NZ_CP102172
• Coordinates: 4100948..4101823 (+)
• Length: 291 a.a.
• NCBI ID: WP_125729778.1
• Uniprot ID: -
• Organism: Aeromonas salmonicida subsp. masoucida strain wx3-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4095948..4106823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQ200_RS18660	nadC	4096183..4097040 (+)	858	WP_282683318.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NQ200_RS18665	-	4097376..4097801 (+)	426	WP_309265797.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NQ200_RS18670	pilB	4097808..4099514 (+)	1707	WP_096119753.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NQ200_RS18675	pilC	4099643..4100884 (+)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
NQ200_RS18680	pilD	4100948..4101823 (+)	876	WP_125729778.1	A24 family peptidase	Machinery gene
NQ200_RS18685	coaE	4101843..4102457 (+)	615	WP_309265798.1	dephospho-CoA kinase	-
NQ200_RS18690	zapD	4102495..4103217 (+)	723	WP_005314166.1	cell division protein ZapD	-
NQ200_RS18695	yacG	4103227..4103421 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
NQ200_RS18700	mutT	4103499..4103906 (-)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-
NQ200_RS18705	secA	4104073..4106793 (-)	2721	WP_021140335.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32437.73 Da
• Isoelectric Point: 7.0169

>NTDB_id=715156 NQ200_RS18680 WP_125729778.1 4100948..4101823(+) (pilD) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

• Length: 876 bp

>NTDB_id=715156 NQ200_RS18680 WP_125729778.1 4100948..4101823(+) (pilD) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGTAATCAC
CCCATAACGGCCCTGGAAAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCTCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCTGGCTGGG
GCACGCTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTACTGTGGGGCGGGCTACTGTTCAACCTGCTTGGCGGATACGTGCCTCTCGGCGATGCTGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCAGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.111	98.969	0.605
pilD	Vibrio campbellii strain DS40M4	55.556	98.969	0.55
pilD	Acinetobacter baumannii D1279779	55.019	92.44	0.509
pilD	Acinetobacter nosocomialis M2	55.019	92.44	0.509
pilD	Neisseria gonorrhoeae MS11	50.373	92.096	0.464