Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M0P24_RS06510 Genome accession   NZ_CP116957
Coordinates   1290653..1292863 (-) Length   736 a.a.
NCBI ID   WP_248497776.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1285653..1297863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS06495 (M0P24_06495) bsh 1286510..1287490 (-) 981 WP_013851669.1 choloylglycine hydrolase -
  M0P24_RS06500 (M0P24_06500) - 1287613..1288557 (-) 945 WP_003064165.1 AEC family transporter -
  M0P24_RS06505 (M0P24_06505) - 1288613..1290231 (-) 1619 Protein_1296 malolactic enzyme -
  M0P24_RS06510 (M0P24_06510) recJ 1290653..1292863 (-) 2211 WP_248497776.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M0P24_RS06515 (M0P24_06515) - 1292905..1293663 (-) 759 WP_117567356.1 SDR family NAD(P)-dependent oxidoreductase -
  M0P24_RS06520 (M0P24_06520) rnz 1293660..1294589 (-) 930 WP_003064159.1 ribonuclease Z -
  M0P24_RS06525 (M0P24_06525) - 1294629..1295267 (-) 639 WP_117567354.1 cystathionine beta-lyase -
  M0P24_RS06530 (M0P24_06530) hflX 1295260..1296498 (-) 1239 WP_117575436.1 GTPase HflX -
  M0P24_RS06535 (M0P24_06535) miaA 1296637..1297524 (-) 888 WP_117575438.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82633.39 Da        Isoelectric Point: 4.4094

>NTDB_id=715151 M0P24_RS06510 WP_248497776.1 1290653..1292863(-) (recJ) [Streptococcus pasteurianus strain WUSP070]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTAEKLIQFLSTDLSQLHDPYLLHDMDKAVNRIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHGLLAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELIKVSDVDMADVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQKIFDEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGIAKGSARSIEAINIFHALDE
HRDLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEINLDTVHSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQVQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLTEDSTANEVVVLDIPDKAEELKSLFVGRHFEAIYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKELSQYLNIPDILLIKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
ATPQEIYEWLINESDE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=715151 M0P24_RS06510 WP_248497776.1 1290653..1292863(-) (recJ) [Streptococcus pasteurianus strain WUSP070]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAGCTGACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGTCGAGGTGTTGATACGGCAGAAAAATTGATTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGACCCTTACCTTTTACATGACATGGATAAAGCGGTTAATCGTATTCGCCAAGCTATTGAGAAT
TACGAGCAAATCTTGGTTTATGGTGATTATGATGCTGACGGAATGACTAGTGCCAGCATTATGAAAGAAGCCCTTGAAAT
GTTGGGTGCCGAAGCCCAAGTTTATCTGCCAAATCGTTTCACAGATGGTTACGGCCCAAATGAATCAGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATTACGGTGGACAATGGCGTAGCAGGGCACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGACCACCACGGTTTGCTAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTTGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGC
ATTATGGTTAAAGTTGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATAAAAGTATCAGATGT
GGATATGGCAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGATGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAGCGCAAGGAAATTGTTCAGAAAATCTTCGATGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGCTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGATTGCTAAAGGTTCTGCCAGAAGTATCGAGGCCATTAATATTTTCCATGCTCTTGATGAG
CACCGTGATTTATTTGAAGCCTTTGGTGGACACGCTGGCGCTGCTGGAATGACTTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACTTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTCTCAGAGATTAACCTTGATACCGTGCACAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACTATGGGGCAAAATGGTGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGACCTTGTTGCCTTTAATCAAGGACATCTGGCGCAGGAATTTCAACAAGTGCAAAATCTTT
GCCTTGCAACGACATTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACGGCTAGCCTTCCAGAACGTGTTCCAGTATTGACTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATCCCTGATAAGGCTGAAGAATTAAAATCACTCTTTGTGGGTCGTCATTTTGAAGCCA
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACCATTTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGAATTGAGCCAATACCTTAATATCCCTGATATTTT
GCTCATTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CTCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAATTGATGGCACTA
GCTACTCCCCAAGAAATATATGAGTGGTTGATTAATGAAAGTGATGAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)

RecJ OB domain (RecJ_OB)

(450-556)

DHHA1 domain (DHHA1)

(317-433)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.164

100

0.673
  recJ Bacillus subtilis subsp. subtilis str. 168

39.226

100

0.413