Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQZ97_RS10010 Genome accession   NZ_CP102136
Coordinates   2052148..2053941 (-) Length   597 a.a.
NCBI ID   WP_257110575.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2047148..2058941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09990 (NQZ97_09990) - 2047956..2048858 (-) 903 WP_002942329.1 ABC transporter permease -
  NQZ97_RS09995 (NQZ97_09995) opp4B 2048872..2049828 (-) 957 WP_043025904.1 oligopeptide ABC transporter permease -
  NQZ97_RS10000 (NQZ97_10000) - 2049830..2050771 (-) 942 WP_306455364.1 ATP-binding cassette domain-containing protein -
  NQZ97_RS10005 (NQZ97_10005) - 2050774..2051772 (-) 999 WP_029174646.1 ABC transporter ATP-binding protein -
  NQZ97_RS10010 (NQZ97_10010) oppA 2052148..2053941 (-) 1794 WP_257110575.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQZ97_RS10015 (NQZ97_10015) pbp3 2054150..2055391 (+) 1242 WP_043025898.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NQZ97_RS10020 (NQZ97_10020) sufB 2055937..2057352 (-) 1416 WP_024379508.1 Fe-S cluster assembly protein SufB -
  NQZ97_RS10025 (NQZ97_10025) sufU 2057763..2058203 (-) 441 WP_257110576.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65768.47 Da        Isoelectric Point: 4.4965

>NTDB_id=714649 NQZ97_RS10010 WP_257110575.1 2052148..2053941(-) (oppA) [Streptococcus suis strain M105052_S26]
MKKTTKLFALAGITLLSASVLAACGAKSSSSSSEQNLSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDS
TFGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDRFL
NIVGMEEYVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEYYFKGKVQKTSSLKVDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEY
ISFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAK
KLLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAI
DMYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIT
ALNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=714649 NQZ97_RS10010 WP_257110575.1 2052148..2053941(-) (oppA) [Streptococcus suis strain M105052_S26]
ATGAAAAAGACAACAAAACTCTTTGCCTTAGCAGGTATCACACTCTTATCTGCATCTGTTTTAGCAGCTTGTGGTGCTAA
GTCGTCATCAAGTTCATCAGAACAAAACTTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTC
AATTGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCA
ACATTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGC
TGAATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTA
CAATCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAGATTCTTG
AACATTGTGGGTATGGAAGAGTATGTTGCAGGAACAGCATCAGACATCTCTGGTATTAAGAAAGTTGACGACTACACAGT
AGAATTGACTGTAAAAGAAATGTCGCCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCGGAACACA
TCTATAAAGACATCCCAGTAGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGG
AAAATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTACTTTAAAGGAAAAGTTCAAAAAAC
AAGTTCATTGAAGGTTGATATTGTATCTCCTGATACAATCGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATA
TGCCTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATAC
ATTTCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAA
ACTTCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAA
ACTCATTGATTATCTCATTCTTCGGCGACATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAA
AAACTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGATGGTAAAGAGTTCAAGAT
TACCTTTGCAGCTCGTAAACGTACGGAAGCAAACGAAGCACTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCT
TGAACGTTGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATT
GATATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACAT
GTCACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATG
TTGAGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACA
GCCCTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGA
ACTTACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(104-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

91.792

100

0.918