Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NQZ97_RS09945 Genome accession   NZ_CP102136
Coordinates   2039912..2040646 (-) Length   244 a.a.
NCBI ID   WP_257110574.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2034912..2045646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09915 (NQZ97_09915) rnpM 2035127..2035423 (-) 297 WP_043025744.1 RNase P modulator RnpM -
  NQZ97_RS09920 (NQZ97_09920) nusA 2035440..2036594 (-) 1155 WP_043025746.1 transcription termination factor NusA -
  NQZ97_RS09925 (NQZ97_09925) rimP 2036668..2037138 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  NQZ97_RS09930 (NQZ97_09930) trmB 2037396..2038034 (-) 639 WP_105130321.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQZ97_RS09935 (NQZ97_09935) ccrZ 2038031..2038825 (-) 795 WP_099833054.1 cell cycle regulator CcrZ -
  NQZ97_RS09940 (NQZ97_09940) - 2038875..2039915 (-) 1041 WP_105130320.1 ABC transporter permease -
  NQZ97_RS09945 (NQZ97_09945) pptA 2039912..2040646 (-) 735 WP_257110574.1 ABC transporter ATP-binding protein Regulator
  NQZ97_RS09950 (NQZ97_09950) - 2040709..2041122 (+) 414 WP_170238056.1 HIT family protein -
  NQZ97_RS09955 (NQZ97_09955) - 2041124..2041453 (+) 330 WP_170238055.1 chemotaxis protein -
  NQZ97_RS09960 (NQZ97_09960) - 2041811..2043004 (-) 1194 WP_024377877.1 LCP family protein -
  NQZ97_RS09965 (NQZ97_09965) - 2043001..2043528 (-) 528 WP_043025753.1 GNAT family N-acetyltransferase -
  NQZ97_RS09970 (NQZ97_09970) tsaE 2043521..2043961 (-) 441 WP_029177428.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26858.19 Da        Isoelectric Point: 4.3606

>NTDB_id=714648 NQZ97_RS09945 WP_257110574.1 2039912..2040646(-) (pptA) [Streptococcus suis strain M105052_S26]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQIAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=714648 NQZ97_RS09945 WP_257110574.1 2039912..2040646(-) (pptA) [Streptococcus suis strain M105052_S26]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACAACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGTTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGTACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAATCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721