Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NQZ97_RS00940 Genome accession   NZ_CP102136
Coordinates   158723..159118 (+) Length   131 a.a.
NCBI ID   WP_044678997.1    Uniprot ID   A0A0Z8JN20
Organism   Streptococcus suis strain M105052_S26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 156498..157787 158723..159118 flank 936


Gene organization within MGE regions


Location: 156498..159118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS00930 (NQZ97_00930) - 156498..157787 (-) 1290 WP_257110507.1 IS4 family transposase -
  NQZ97_RS00935 (NQZ97_00935) - 157889..158668 (-) 780 WP_105130852.1 DUF2785 domain-containing protein -
  NQZ97_RS00940 (NQZ97_00940) ssbA 158723..159118 (+) 396 WP_044678997.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14868.73 Da        Isoelectric Point: 5.0026

>NTDB_id=714618 NQZ97_RS00940 WP_044678997.1 158723..159118(+) (ssbA) [Streptococcus suis strain M105052_S26]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=714618 NQZ97_RS00940 WP_044678997.1 158723..159118(+) (ssbA) [Streptococcus suis strain M105052_S26]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACAGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
CCGTGTTACTGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCGATTGATGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACGGAAATCTTGGGCAATACCTTCCAGCTGCTCGAAAGTCGGGCTCA
ACGTGCTATGCGTGAAAATAACACTGGTGATGACCTAGCTGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JN20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366