Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NQZ98_RS00995 Genome accession   NZ_CP102135
Coordinates   155310..155705 (+) Length   131 a.a.
NCBI ID   WP_015646304.1    Uniprot ID   A0A0Z8MGY0
Organism   Streptococcus suis strain M106471_S40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 150310..160705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS00965 (NQZ98_00965) pepA 150990..152051 (-) 1062 WP_172087485.1 glutamyl aminopeptidase -
  NQZ98_RS00970 (NQZ98_00970) - 152198..152482 (+) 285 WP_012774909.1 DUF4651 domain-containing protein -
  NQZ98_RS00975 (NQZ98_00975) - 152479..152799 (+) 321 WP_044676366.1 thioredoxin family protein -
  NQZ98_RS00980 (NQZ98_00980) - 152844..153800 (+) 957 WP_257110274.1 DUF1002 domain-containing protein -
  NQZ98_RS00985 (NQZ98_00985) ytpR 153819..154442 (+) 624 WP_024411999.1 YtpR family tRNA-binding protein -
  NQZ98_RS00990 (NQZ98_00990) - 154476..155255 (-) 780 Protein_160 DUF2785 domain-containing protein -
  NQZ98_RS00995 (NQZ98_00995) ssbA 155310..155705 (+) 396 WP_015646304.1 single-stranded DNA-binding protein Machinery gene
  NQZ98_RS01000 (NQZ98_01000) - 155824..156069 (-) 246 WP_257110275.1 hypothetical protein -
  NQZ98_RS01005 (NQZ98_01005) groES 156266..156547 (+) 282 WP_014637330.1 co-chaperone GroES -
  NQZ98_RS01010 (NQZ98_01010) groL 156559..158181 (+) 1623 WP_257116643.1 chaperonin GroEL -
  NQZ98_RS01015 (NQZ98_01015) rpsL 158413..158826 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  NQZ98_RS01020 (NQZ98_01020) rpsG 158843..159313 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14837.68 Da        Isoelectric Point: 5.0026

>NTDB_id=714565 NQZ98_RS00995 WP_015646304.1 155310..155705(+) (ssbA) [Streptococcus suis strain M106471_S40]
MYNKVIAIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=714565 NQZ98_RS00995 WP_015646304.1 155310..155705(+) (ssbA) [Streptococcus suis strain M106471_S40]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTTACTGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGATGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTTTGGGACAATCGTTCCAGTTGCTCGAAAGTCGCGCCCA
ACGTGCCATGCGTGAAAATAACACAGGCGATGACCTAGCTGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8MGY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382