Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   NQZ98_RS00825 Genome accession   NZ_CP102135
Coordinates   132463..133413 (+) Length   316 a.a.
NCBI ID   WP_024399581.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 127463..138413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS00815 (NQZ98_00815) - 131027..131392 (+) 366 WP_002936568.1 DUF1033 family protein -
  NQZ98_RS00820 (NQZ98_00820) - 131427..132377 (-) 951 WP_024399580.1 S66 peptidase family protein -
  NQZ98_RS00825 (NQZ98_00825) comYA 132463..133413 (+) 951 WP_024399581.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ98_RS00830 (NQZ98_00830) comYB 133325..134362 (+) 1038 WP_257116642.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ98_RS00835 (NQZ98_00835) comYC 134364..134645 (+) 282 WP_024387069.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ98_RS00840 (NQZ98_00840) comGD 134626..135033 (+) 408 WP_024387070.1 competence type IV pilus minor pilin ComGD -
  NQZ98_RS00845 (NQZ98_00845) comYE 135005..135298 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ98_RS00850 (NQZ98_00850) comGF/cglF 135285..135719 (+) 435 WP_079268055.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ98_RS00855 (NQZ98_00855) comGG 135697..136224 (+) 528 WP_024399584.1 competence type IV pilus minor pilin ComGG -
  NQZ98_RS00860 (NQZ98_00860) - 136370..137233 (+) 864 WP_105141859.1 IS982 family transposase -
  NQZ98_RS00865 (NQZ98_00865) - 137478..137645 (-) 168 WP_171992300.1 hypothetical protein -
  NQZ98_RS00870 (NQZ98_00870) - 137689..138147 (-) 459 WP_024387081.1 hypothetical protein -
  NQZ98_RS00875 (NQZ98_00875) - 138151..138366 (-) 216 WP_228380969.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35375.27 Da        Isoelectric Point: 5.6938

>NTDB_id=714558 NQZ98_RS00825 WP_024399581.1 132463..133413(+) (comYA) [Streptococcus suis strain M106471_S40]
MIQEKARKMIEEAVADRVSDIYLVPRGQGYQVYHRIMDEREFVQDLAEEEVIAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGAPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=714558 NQZ98_RS00825 WP_024399581.1 132463..133413(+) (comYA) [Streptococcus suis strain M106471_S40]
ATGATTCAAGAAAAAGCAAGAAAGATGATTGAGGAGGCGGTGGCAGATAGGGTCAGTGATATTTATCTGGTTCCTCGTGG
TCAAGGCTACCAAGTCTATCATCGTATTATGGATGAACGGGAGTTTGTGCAAGACTTGGCTGAGGAAGAAGTAATAGCCA
TCATTAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGGTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGTAAGGAAAGTCTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGACTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAGCAGGAGGACATGCTTCAACTTCAACTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAGATTCGGGATGCGGAAACGG
CACGGGCGGTCATCAGGGCCAGTCTGACAGGTGCGACGGTCTTCTCAACGGTACACGCAAGGTCTATTTCGGGTGTCTAT
GCTCGTATGTTGGAATTGGGGGTCAGTCCTGAGGAGCTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCGG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGGC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCGCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.71

98.101

0.674
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.273

98.418

0.642
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.839

98.101

0.636
  comGA Lactococcus lactis subsp. cremoris KW2

53.312

100

0.535
  comGA Latilactobacillus sakei subsp. sakei 23K

41.155

87.658

0.361