Detailed information NTG0714559

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: NQZ98_RS00830
• Genome accession: NZ_CP102135
• Coordinates: 133325..134362 (+)
• Length: 345 a.a.
• NCBI ID: WP_257116642.1
• Uniprot ID: -
• Organism: Streptococcus suis strain M106471_S40
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 128325..139362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ98_RS00815 (NQZ98_00815)	-	131027..131392 (+)	366	WP_002936568.1	DUF1033 family protein	-
NQZ98_RS00820 (NQZ98_00820)	-	131427..132377 (-)	951	WP_024399580.1	S66 peptidase family protein	-
NQZ98_RS00825 (NQZ98_00825)	comYA	132463..133413 (+)	951	WP_024399581.1	competence type IV pilus ATPase ComGA	Machinery gene
NQZ98_RS00830 (NQZ98_00830)	comYB	133325..134362 (+)	1038	WP_257116642.1	competence type IV pilus assembly protein ComGB	Machinery gene
NQZ98_RS00835 (NQZ98_00835)	comYC	134364..134645 (+)	282	WP_024387069.1	competence type IV pilus major pilin ComGC	Machinery gene
NQZ98_RS00840 (NQZ98_00840)	comGD	134626..135033 (+)	408	WP_024387070.1	competence type IV pilus minor pilin ComGD	-
NQZ98_RS00845 (NQZ98_00845)	comYE	135005..135298 (+)	294	WP_011921722.1	competence type IV pilus minor pilin ComGE	Machinery gene
NQZ98_RS00850 (NQZ98_00850)	comGF/cglF	135285..135719 (+)	435	WP_079268055.1	competence type IV pilus minor pilin ComGF	Machinery gene
NQZ98_RS00855 (NQZ98_00855)	comGG	135697..136224 (+)	528	WP_024399584.1	competence type IV pilus minor pilin ComGG	-
NQZ98_RS00860 (NQZ98_00860)	-	136370..137233 (+)	864	WP_105141859.1	IS982 family transposase	-
NQZ98_RS00865 (NQZ98_00865)	-	137478..137645 (-)	168	WP_171992300.1	hypothetical protein	-
NQZ98_RS00870 (NQZ98_00870)	-	137689..138147 (-)	459	WP_024387081.1	hypothetical protein	-
NQZ98_RS00875 (NQZ98_00875)	-	138151..138366 (-)	216	WP_228380969.1	hypothetical protein	-
NQZ98_RS00880 (NQZ98_00880)	-	138415..138612 (-)	198	WP_228380148.1	hypothetical protein	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 39002.05 Da
• Isoelectric Point: 9.6162

>NTDB_id=714559 NQZ98_RS00830 WP_257116642.1 133325..134362(+) (comYB) [Streptococcus suis strain M106471_S40]
MRKLIGFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLAEPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLIHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLERSLSNGRSFNEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide

• Length: 1038 bp

>NTDB_id=714559 NQZ98_RS00830 WP_257116642.1 133325..134362(+) (comYB) [Streptococcus suis strain M106471_S40]
ATGCGCAAATTGATCGGCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCGCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCCAGCGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGAACCCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTGCTG
GCAGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTAGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAT
TCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATATTGC
TTGGTTTTCTGCTTTTGATTATGCTTGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACAGTG
CTGATTAATCATCTACCGACCATCTTTTTATCTCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAATAAAATTAAGGTCTTTTCCTGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAAGAG
CAGCAATCGCAGCTTTTTCGTGAGATTGGTCAGGACCTGGAGCGGTCGCTCTCAAATGGTCGTAGTTTTAACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTACGGTCAGGTCAAGTCCAAGTTGGGTAGCGAGT
TGACAGTTTATGCAGCTGAGTGTTGGGAGGATTTCTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	63.158	99.13	0.626
comGB/cglB	Streptococcus mitis SK321	60.597	97.101	0.588
comGB/cglB	Streptococcus mitis NCTC 12261	60.597	97.101	0.588
comGB/cglB	Streptococcus pneumoniae Rx1	60.299	97.101	0.586
comGB/cglB	Streptococcus pneumoniae D39	60.299	97.101	0.586
comGB/cglB	Streptococcus pneumoniae R6	60.299	97.101	0.586
comGB/cglB	Streptococcus pneumoniae TIGR4	60.299	97.101	0.586
comYB	Streptococcus mutans UA159	59.238	98.841	0.586
comYB	Streptococcus mutans UA140	59.238	98.841	0.586
comGB	Lactococcus lactis subsp. cremoris KW2	50.148	97.681	0.49