Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NQU90_RS01910 Genome accession   NZ_CP102108
Coordinates   391377..392618 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain GD21SC2322TT     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386377..397618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU90_RS01885 (NQU90_01885) mutT 388371..388775 (+) 405 WP_257124211.1 8-oxo-dGTP diphosphatase MutT -
  NQU90_RS01890 (NQU90_01890) yacG 388851..389045 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  NQU90_RS01895 (NQU90_01895) zapD 389055..389777 (-) 723 WP_216952203.1 cell division protein ZapD -
  NQU90_RS01900 (NQU90_01900) coaE 389815..390429 (-) 615 WP_257124212.1 dephospho-CoA kinase -
  NQU90_RS01905 (NQU90_01905) pilD 390443..391315 (-) 873 WP_236356080.1 A24 family peptidase Machinery gene
  NQU90_RS01910 (NQU90_01910) pilC 391377..392618 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  NQU90_RS01915 (NQU90_01915) pilB 392859..394565 (-) 1707 WP_257124213.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NQU90_RS01920 (NQU90_01920) - 394565..394942 (-) 378 WP_151286536.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NQU90_RS01925 (NQU90_01925) nadC 395258..396133 (-) 876 WP_257124214.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NQU90_RS01930 (NQU90_01930) - 396137..396607 (-) 471 WP_005336129.1 TIGR02281 family clan AA aspartic protease -
  NQU90_RS01935 (NQU90_01935) ampD 396738..397313 (+) 576 WP_019444780.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=714448 NQU90_RS01910 WP_005336136.1 391377..392618(-) (pilC) [Aeromonas veronii strain GD21SC2322TT]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=714448 NQU90_RS01910 WP_005336136.1 391377..392618(-) (pilC) [Aeromonas veronii strain GD21SC2322TT]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACCATGCTCTCCGCTGGCGTACCACTGGTGCAGAGCCTGCAGATTATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAAGCGCTGCGTCGCCATCCTC
TCTATTTCGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGGGCACTGGAGACCATCTACGACCGTATC
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACCGCC
CTTGGCATCTTCCTCTATGTGCGGGCTTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGAATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCTCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCAGCAGGGGCCTCGGGTAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCGGGCATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368