Detailed information NTG0714447

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NQU90_RS01905
• Genome accession: NZ_CP102108
• Coordinates: 390443..391315 (-)
• Length: 290 a.a.
• NCBI ID: WP_236356080.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain GD21SC2322TT
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 385443..396315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQU90_RS01880 (NQU90_01880)	secA	385465..388185 (+)	2721	WP_257124210.1	preprotein translocase subunit SecA	-
NQU90_RS01885 (NQU90_01885)	mutT	388371..388775 (+)	405	WP_257124211.1	8-oxo-dGTP diphosphatase MutT	-
NQU90_RS01890 (NQU90_01890)	yacG	388851..389045 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
NQU90_RS01895 (NQU90_01895)	zapD	389055..389777 (-)	723	WP_216952203.1	cell division protein ZapD	-
NQU90_RS01900 (NQU90_01900)	coaE	389815..390429 (-)	615	WP_257124212.1	dephospho-CoA kinase	-
NQU90_RS01905 (NQU90_01905)	pilD	390443..391315 (-)	873	WP_236356080.1	A24 family peptidase	Machinery gene
NQU90_RS01910 (NQU90_01910)	pilC	391377..392618 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
NQU90_RS01915 (NQU90_01915)	pilB	392859..394565 (-)	1707	WP_257124213.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NQU90_RS01920 (NQU90_01920)	-	394565..394942 (-)	378	WP_151286536.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NQU90_RS01925 (NQU90_01925)	nadC	395258..396133 (-)	876	WP_257124214.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32116.37 Da
• Isoelectric Point: 6.6856

>NTDB_id=714447 NQU90_RS01905 WP_236356080.1 390443..391315(-) (pilD) [Aeromonas veronii strain GD21SC2322TT]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=714447 NQU90_RS01905 WP_236356080.1 390443..391315(-) (pilD) [Aeromonas veronii strain GD21SC2322TT]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCACTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCACGGCTACTTTT
CCCCCGATGAGGAGGCTACTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGCCCTCATTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGTTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCACTGCTCTCGGTGGCCGTAGCAATGGTCATAACCCCGGGCTGGGGGA
CGCTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGTTGTTCAACCTGGCAGGTGGCTTCGTGCCGCTGGCGGATGCGGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAAGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
GTAGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGTTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462