Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NQU59_RS01690 Genome accession   NZ_CP102099
Coordinates   355495..356721 (+) Length   408 a.a.
NCBI ID   WP_096911156.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350495..361721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS01655 (NQU59_01655) rimP 351103..351627 (-) 525 WP_005240078.1 ribosome maturation factor RimP -
  NQU59_RS01675 (NQU59_01675) secG 352254..352583 (-) 330 WP_004656213.1 preprotein translocase subunit SecG -
  NQU59_RS01680 (NQU59_01680) tpiA 352596..353387 (-) 792 WP_096911157.1 triose-phosphate isomerase -
  NQU59_RS01685 (NQU59_01685) pilB 353758..355470 (+) 1713 WP_005240082.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NQU59_RS01690 (NQU59_01690) pilC 355495..356721 (+) 1227 WP_096911156.1 type II secretion system F family protein Machinery gene
  NQU59_RS01695 (NQU59_01695) pilD 356727..357587 (+) 861 WP_005240087.1 A24 family peptidase Machinery gene
  NQU59_RS01700 (NQU59_01700) coaE 357589..358194 (+) 606 WP_257064720.1 dephospho-CoA kinase -
  NQU59_RS01705 (NQU59_01705) - 358191..359102 (-) 912 WP_257064722.1 DMT family transporter -
  NQU59_RS01710 (NQU59_01710) rlmB 359133..359882 (-) 750 WP_005278530.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NQU59_RS01715 (NQU59_01715) - 360081..360407 (-) 327 WP_004637677.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45025.53 Da        Isoelectric Point: 9.8061

>NTDB_id=714378 NQU59_RS01690 WP_096911156.1 355495..356721(+) (pilC) [Acinetobacter colistiniresistens strain C-214]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVEMSKWMQEYWFILIIVIGIIIT
AFLEAKKRSKKFRDTLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=714378 NQU59_RS01690 WP_096911156.1 355495..356721(+) (pilC) [Acinetobacter colistiniresistens strain C-214]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTACGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTACCTGCACGTAATATGGCCTTGGCTAAAGTTACGTTGCGTAAACAAGGGGTGACCATCAAGAACATTCGAGAAAAGC
GTAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTGACCACTTTGGATATCACCATTTTTACCCGTCAATTGGCGACA
ATGATGAAAGCGGGCGTTCCCTTGGTACAAGGCTTTGAAATCGTGGCTGAAGGCTTAGAAAACCCAGCCATGCGTGAAGT
GGTCCTTGGGATTAAAAGTGAAGTCGAAGGGGGAAATACCTTCGCGGGTGCCCTGAAAAAATATCCGCAGTATTTTGATA
ATCTGTTTTGCTCGCTGGTTGAATCTGGTGAACAATCTGGTGCACTTGAAACCATGCTGGACCGAGTTGCAATTTATAAA
GAAAAGAGTGAATTACTCAAACAAAAAATCAAGAAAGCCATGAAATATCCAATTTCGGTGGTTGTGGTTGCAGTGATTGT
GACCATTATTTTGATGGTGAAGGTTGTCCCTGTATTTCAGGATCTATTTAGCTCTTTTGGTGCAGATCTACCCGCTTTTA
CCAAAATGGTGGTCGAAATGTCCAAATGGATGCAAGAGTACTGGTTTATTCTGATTATCGTGATTGGCATAATTATTACC
GCCTTTTTGGAAGCTAAAAAACGTAGTAAAAAGTTTCGCGACACCTTGGATAAAATGGCACTCAAAGCGCCGATTTTTGG
GGATTTGGTCTATAAAGCCATTATTGCCCGTTATAGCCGTACTTTGGCAACAACTTTTGCAGCAGGTGTTCCACTAATTG
ATGCACTTGAGTCAACTGCTGGTGCAACCAATAATGTCGTGTATGAAGAAGCGGTGATGAAAATTCGTGAAGATGTCGCC
ACAGGCCAACAGCTACAGTTTGCCATGCGTGTTTCTAACCGTTTTCCATCAATGGCCATTCAAATGGTGGCAATTGGTGA
AGAATCGGGGGCTTTAGACAGTATGCTCGACAAAGTTGCGACGCACTATGAAAATGAGGTGGATAATGCTGTCGATGGCT
TGACCTCAATGATGGAACCATTAATCATGGCCATTCTAGGCGTGCTGGTCGGTGGCCTGGTTATCGCGATGTATCTTCCA
ATCTTCCAAATGGGCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.402

100

0.924
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

60.837

99.51

0.605
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.015

99.755

0.419
  pilC Vibrio campbellii strain DS40M4

40.594

99.02

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36