Detailed information NTG0714379

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NQU59_RS01695
• Genome accession: NZ_CP102099
• Coordinates: 356727..357587 (+)
• Length: 286 a.a.
• NCBI ID: WP_005240087.1
• Uniprot ID: N9PSW4
• Organism: Acinetobacter colistiniresistens strain C-214
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 351727..362587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQU59_RS01675 (NQU59_01675)	secG	352254..352583 (-)	330	WP_004656213.1	preprotein translocase subunit SecG	-
NQU59_RS01680 (NQU59_01680)	tpiA	352596..353387 (-)	792	WP_096911157.1	triose-phosphate isomerase	-
NQU59_RS01685 (NQU59_01685)	pilB	353758..355470 (+)	1713	WP_005240082.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NQU59_RS01690 (NQU59_01690)	pilC	355495..356721 (+)	1227	WP_096911156.1	type II secretion system F family protein	Machinery gene
NQU59_RS01695 (NQU59_01695)	pilD	356727..357587 (+)	861	WP_005240087.1	A24 family peptidase	Machinery gene
NQU59_RS01700 (NQU59_01700)	coaE	357589..358194 (+)	606	WP_257064720.1	dephospho-CoA kinase	-
NQU59_RS01705 (NQU59_01705)	-	358191..359102 (-)	912	WP_257064722.1	DMT family transporter	-
NQU59_RS01710 (NQU59_01710)	rlmB	359133..359882 (-)	750	WP_005278530.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
NQU59_RS01715 (NQU59_01715)	-	360081..360407 (-)	327	WP_004637677.1	pyrimidine/purine nucleoside phosphorylase	-
NQU59_RS01720 (NQU59_01720)	recN	360819..362477 (+)	1659	WP_096911153.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32049.33 Da
• Isoelectric Point: 6.4568

>NTDB_id=714379 NQU59_RS01695 WP_005240087.1 356727..357587(+) (pilD) [Acinetobacter colistiniresistens strain C-214]
MQDFFSYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECHMLLHPEQPIIDQSKLSLSQPASTCPKCDSP
IHWYHNIPVISWLVLRGKCGTCQNPISIRYPFIELLTMVCSLVVVAVFGATVQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSYAIYTTASLAIWGYLIGFLCLWIVYYIFKLITGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSM
IGAVIGIILMKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=714379 NQU59_RS01695 WP_005240087.1 356727..357587(+) (pilD) [Acinetobacter colistiniresistens strain C-214]
ATGCAAGATTTTTTTTCATATTTTATCGAAAATCCCACTGCACTTTATCTGGCGGTTGGGCTTTTTAGTTTATGCATTGG
TAGCTTTCTAAATGTTGTCATTTTTCGCACGCCTCGAATGATGGAGCAAGAGTGGCAGCAAGAATGCCACATGCTCCTCC
ACCCTGAACAACCGATAATTGATCAAAGCAAGCTCAGTTTAAGCCAACCCGCCTCGACTTGCCCCAAATGCGACTCACCT
ATCCATTGGTACCATAATATCCCTGTGATCAGCTGGTTAGTACTTCGTGGTAAATGTGGGACTTGCCAAAACCCGATTAG
TATCCGCTACCCTTTTATTGAGCTGCTCACCATGGTCTGCTCATTGGTTGTGGTTGCCGTATTTGGTGCAACAGTGCAAA
TGTTGTTTGGTCTAGTTCTGACTTGGGTATTAATTACATTAACCTTTATTGATTTTGATACACAATTATTACCTGATCGC
TTTACCCTTCCCTTAGCAGCCTTAGGTTTAGGCATTAATAGTTATGCGATTTATACCACTGCTAGCCTAGCCATTTGGGG
CTATTTAATCGGCTTCCTCTGCCTCTGGATTGTTTACTACATCTTTAAACTAATCACTGGTAAGGAAGGGATGGGCTATG
GCGATTTCAAGCTACTCGCAGCGTTAGGTGCATGGATGGGACCAATGCTACTCCCACTCATTGTGTTACTCTCTTCTATG
ATTGGTGCAGTGATTGGTATTATTCTGATGAAAATGCGGGGCGAAAATCAACCTTTTGCATTTGGTCCATATATCGCAAT
TGCGGGCTGGATCGCCTTCTTATGGGGTGATCAGATCATGAAAGTTTATTTAGGTGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: N9PSW4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	82.168	100	0.822
pilD	Acinetobacter baumannii D1279779	81.469	100	0.815
pilD	Vibrio cholerae strain A1552	52.809	93.357	0.493
pilD	Vibrio campbellii strain DS40M4	50.376	93.007	0.469
pilD	Neisseria gonorrhoeae MS11	46.52	95.455	0.444