Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NQZ84_RS00820 Genome accession   NZ_CP102094
Coordinates   132350..132745 (+) Length   131 a.a.
NCBI ID   WP_024409105.1    Uniprot ID   A0A0Z8WT08
Organism   Streptococcus suis strain 12RC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127350..137745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS00790 (NQZ84_00790) - 127484..128740 (+) 1257 WP_044752026.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  NQZ84_RS00795 (NQZ84_00795) pepA 128785..129846 (-) 1062 WP_257049523.1 glutamyl aminopeptidase -
  NQZ84_RS00800 (NQZ84_00800) - 129993..130277 (+) 285 WP_044669887.1 DUF4651 domain-containing protein -
  NQZ84_RS00805 (NQZ84_00805) - 130274..130594 (+) 321 WP_044669885.1 thioredoxin family protein -
  NQZ84_RS00810 (NQZ84_00810) - 130639..131595 (+) 957 WP_257049527.1 DUF1002 domain-containing protein -
  NQZ84_RS00815 (NQZ84_00815) ytpR 131614..132237 (+) 624 WP_257049528.1 YtpR family tRNA-binding protein -
  NQZ84_RS00820 (NQZ84_00820) ssbA 132350..132745 (+) 396 WP_024409105.1 single-stranded DNA-binding protein Machinery gene
  NQZ84_RS00825 (NQZ84_00825) groES 133307..133588 (+) 282 WP_257049529.1 co-chaperone GroES -
  NQZ84_RS00830 (NQZ84_00830) groL 133600..135222 (+) 1623 WP_044680838.1 chaperonin GroEL -
  NQZ84_RS00835 (NQZ84_00835) rpsL 135453..135866 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  NQZ84_RS00840 (NQZ84_00840) rpsG 135883..136353 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14824.68 Da        Isoelectric Point: 5.0026

>NTDB_id=714288 NQZ84_RS00820 WP_024409105.1 132350..132745(+) (ssbA) [Streptococcus suis strain 12RC1]
MYNKVIAIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=714288 NQZ84_RS00820 WP_024409105.1 132350..132745(+) (ssbA) [Streptococcus suis strain 12RC1]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAGGCAGACTTTCTCAATGTCATTTTCT
GGGGAAAACTGGCGGAAACACTTGTCTCTTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTCTAGGCCAATCTTTCCAATTACTAGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8WT08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374