Detailed information NTG0713674

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: NPS16_RS08960
• Genome accession: NZ_CP101986
• Coordinates: 1892050..1892445 (-)
• Length: 131 a.a.
• NCBI ID: WP_002263999.1
• Uniprot ID: A0AAX1K1Y7
• Organism: Streptococcus mutans strain COCC33-14
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1887050..1897445

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPS16_RS08935 (NPS16_08935)	-	1887098..1887301 (-)	204	Protein_1720	hypothetical protein	-
NPS16_RS08940 (NPS16_08940)	-	1887367..1888674 (-)	1308	WP_002263458.1	extracellular solute-binding protein	-
NPS16_RS08945 (NPS16_08945)	-	1888667..1889347 (-)	681	WP_002265885.1	response regulator transcription factor	-
NPS16_RS08950 (NPS16_08950)	-	1889347..1890669 (-)	1323	WP_002263456.1	sensor histidine kinase	-
NPS16_RS08955 (NPS16_08955)	-	1890669..1891631 (-)	963	WP_002265886.1	sugar ABC transporter substrate-binding protein	-
NPS16_RS08960 (NPS16_08960)	ssbA	1892050..1892445 (-)	396	WP_002263999.1	single-stranded DNA-binding protein	Machinery gene
NPS16_RS08965 (NPS16_08965)	-	1892532..1892888 (-)	357	WP_002265887.1	rhodanese-like domain-containing protein	-
NPS16_RS08970 (NPS16_08970)	-	1892888..1893319 (-)	432	WP_374684428.1	MarR family winged helix-turn-helix transcriptional regulator	-
NPS16_RS08975 (NPS16_08975)	ytpR	1893408..1894034 (-)	627	WP_002265889.1	YtpR family tRNA-binding protein	-
NPS16_RS08980 (NPS16_08980)	-	1894031..1894360 (-)	330	WP_002264003.1	thioredoxin family protein	-
NPS16_RS08985 (NPS16_08985)	-	1894338..1894646 (-)	309	WP_019317545.1	DUF4651 domain-containing protein	-
NPS16_RS08990 (NPS16_08990)	pepA	1894706..1895773 (+)	1068	WP_002272678.1	glutamyl aminopeptidase	-
NPS16_RS08995 (NPS16_08995)	proC	1895829..1896599 (+)	771	WP_002263447.1	pyrroline-5-carboxylate reductase	-
NPS16_RS09000 (NPS16_09000)	-	1896684..1897346 (-)	663	WP_002263446.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14869.91 Da
• Isoelectric Point: 6.4856

>NTDB_id=713674 NPS16_RS08960 WP_002263999.1 1892050..1892445(-) (ssbA) [Streptococcus mutans strain COCC33-14]
MYNKVILIGRLVATPEMVKTPKDKSVTRVTLAVNRRFKSQDGERQADFVNVVLWGRLAETIASYGSKGSLISLDGELRTR
KYEKDGVTHFVTEVLGHSFQLLESRAQRAMRENNSENDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=713674 NPS16_RS08960 WP_002263999.1 1892050..1892445(-) (ssbA) [Streptococcus mutans strain COCC33-14]
ATGTATAATAAAGTTATTTTGATTGGTCGTTTAGTTGCGACACCTGAAATGGTAAAAACACCAAAGGATAAGTCTGTTAC
GCGCGTGACACTGGCTGTCAATCGGCGATTTAAAAGTCAAGATGGGGAAAGGCAGGCTGATTTTGTCAATGTTGTTCTTT
GGGGCAGATTGGCAGAAACAATAGCTTCCTATGGTAGTAAGGGAAGTCTCATCTCTCTTGATGGAGAATTGCGTACCCGT
AAATATGAAAAAGATGGCGTCACTCATTTTGTGACTGAAGTTTTGGGACACTCCTTTCAATTACTGGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATTCTGAAAATGATTTGGCCGATTTGGTTCTGGAAGAGGAGGAACTCCCTTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	99.237	100	0.992
ssbB	Streptococcus sobrinus strain NIDR 6715-7	79.389	100	0.794
ssbB/cilA	Streptococcus pneumoniae TIGR4	76.336	100	0.763
ssbB/cilA	Streptococcus pneumoniae Rx1	75.573	100	0.756
ssbB/cilA	Streptococcus pneumoniae D39	75.573	100	0.756
ssbB/cilA	Streptococcus pneumoniae R6	75.573	100	0.756
ssbB/cilA	Streptococcus mitis SK321	75.573	100	0.756
ssbB/cilA	Streptococcus mitis NCTC 12261	74.046	100	0.74
ssbB	Lactococcus lactis subsp. cremoris KW2	58.929	85.496	0.504
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	42.478	86.26	0.366