NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	NPS16_RS08550	Genome accession	NZ_CP101986
Coordinates	1810341..1810835 (-)	Length	164 a.a.
NCBI ID	WP_002261867.1	Uniprot ID	A0AAX1K2T1
Organism	Streptococcus mutans strain COCC33-14
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1805341..1815835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPS16_RS08515 (NPS16_08515)	-	1805411..1805632 (+)	222	WP_019312622.1	hypothetical protein	-
NPS16_RS08520 (NPS16_08520)	-	1806022..1806966 (+)	945	WP_002262667.1	magnesium transporter CorA family protein	-
NPS16_RS08525 (NPS16_08525)	-	1807186..1807848 (+)	663	WP_258968882.1	DUF1129 domain-containing protein	-
NPS16_RS08530 (NPS16_08530)	hdrR	1807987..1808343 (+)	357	WP_002268419.1	LytTR family transcriptional regulator HdrR	Regulator
NPS16_RS08535 (NPS16_08535)	hdrM	1808340..1809026 (+)	687	WP_002268420.1	hdrR negative regulator HdrM	Regulator
NPS16_RS08540 (NPS16_08540)	-	1809034..1809753 (-)	720	WP_002273460.1	TraX family protein	-
NPS16_RS08545 (NPS16_08545)	rpsR	1810072..1810311 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
NPS16_RS08550 (NPS16_08550)	ssbA	1810341..1810835 (-)	495	WP_002261867.1	single-stranded DNA-binding protein	Machinery gene
NPS16_RS08555 (NPS16_08555)	rpsF	1810853..1811143 (-)	291	WP_002261866.1	30S ribosomal protein S6	-
NPS16_RS08560 (NPS16_08560)	-	1811299..1811544 (-)	246	WP_002263367.1	hypothetical protein	-
NPS16_RS08565 (NPS16_08565)	-	1811849..1812052 (+)	204	WP_002267523.1	hypothetical protein	-
NPS16_RS08570 (NPS16_08570)	mutY	1813091..1814236 (+)	1146	WP_002265472.1	A/G-specific adenine glycosylase	-
NPS16_RS08575 (NPS16_08575)	-	1814428..1815477 (-)	1050	WP_019317529.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

Download Length: 164 a.a. Molecular weight: 18331.97 Da Isoelectric Point: 4.7187

                                >NTDB_id=713668 NPS16_RS08550 WP_002261867.1 1810341..1810835(-) (ssbA) [Streptococcus mutans strain COCC33-14]

MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR

NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD

DLPF

Nucleotide

Download Length: 495 bp

                                >NTDB_id=713668 NPS16_RS08550 WP_002261867.1 1810341..1810835(-) (ssbA) [Streptococcus mutans strain COCC33-14]

ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC

AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT

GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC

AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC

TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT

CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT

GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.062	100	0.616
ssb	Latilactobacillus sakei subsp. sakei 23K	57.059	100	0.591
ssbB/cilA	Streptococcus pneumoniae TIGR4	51.261	72.561	0.372
ssb	Glaesserella parasuis strain SC1401	32.62	100	0.372
ssbB	Streptococcus sobrinus strain NIDR 6715-7	52.632	69.512	0.366
ssbB/cilA	Streptococcus mitis NCTC 12261	50.42	72.561	0.366
ssbB/cilA	Streptococcus pneumoniae Rx1	50.42	72.561	0.366
ssbB/cilA	Streptococcus pneumoniae D39	50.42	72.561	0.366
ssbB/cilA	Streptococcus pneumoniae R6	50.42	72.561	0.366
ssbB/cilA	Streptococcus mitis SK321	50.42	72.561	0.366

Detailed information NTG0713668