Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NPN27_RS04885 Genome accession   NZ_CP101739
Coordinates   1016484..1017701 (+) Length   405 a.a.
NCBI ID   WP_256518820.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain J15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011484..1022701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPN27_RS04865 (NPN27_04865) - 1013257..1013786 (-) 530 Protein_961 REP-associated tyrosine transposase -
  NPN27_RS22065 - 1014002..1014469 (-) 468 WP_272893401.1 pilin -
  NPN27_RS04880 (NPN27_04880) pilB 1014779..1016482 (+) 1704 WP_256518819.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NPN27_RS04885 (NPN27_04885) pilC 1016484..1017701 (+) 1218 WP_256518820.1 type II secretion system F family protein Machinery gene
  NPN27_RS04890 (NPN27_04890) pilD 1017706..1018572 (+) 867 WP_256518821.1 prepilin peptidase Machinery gene
  NPN27_RS04895 (NPN27_04895) coaE 1018704..1019312 (+) 609 WP_080977605.1 dephospho-CoA kinase -
  NPN27_RS04900 (NPN27_04900) yacG 1019309..1019506 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  NPN27_RS04905 (NPN27_04905) - 1019519..1020199 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  NPN27_RS04910 (NPN27_04910) - 1020256..1021296 (-) 1041 WP_256518823.1 NADP(H)-dependent aldo-keto reductase -
  NPN27_RS04915 (NPN27_04915) rplM 1021716..1022144 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  NPN27_RS04920 (NPN27_04920) rpsI 1022160..1022552 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44008.76 Da        Isoelectric Point: 9.9374

>NTDB_id=711868 NPN27_RS04885 WP_256518820.1 1016484..1017701(+) (pilC) [Stutzerimonas stutzeri strain J15]
MAQKAIKTSVFTWEGTNKQGAKIKGELNGVSPAMVKAQLRRQGVNPQKVRKKSVSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHVVLLVMFGAAYAFK
TAHGKSERFRNGFDRFLLKVPVVGEILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATMKVKADVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=711868 NPN27_RS04885 WP_256518820.1 1016484..1017701(+) (pilC) [Stutzerimonas stutzeri strain J15]
ATGGCGCAGAAAGCGATAAAAACCAGTGTGTTCACCTGGGAAGGGACAAACAAGCAGGGCGCGAAGATAAAGGGCGAGCT
CAACGGCGTGAGCCCGGCGATGGTCAAGGCGCAGCTACGCAGGCAGGGCGTCAACCCCCAAAAGGTGCGCAAGAAGTCGG
TTTCGCTGTTCAGTGCTGGCAAAAAGATCAAGCCGATGGACATCGCCCTGTTCACTCGCCAGATGGCAACCATGATGAAA
GCAGGTGTGCCGCTATTGCAGTCCTTCGACATCATCGGCGAGGGCTTTGACAATCCGAATATGCGCAAACTGGTCGATGA
TCTGAAACAGGAGGTCGCTGCGGGTAATAGCTTCGCAACCGCACTGCGCAAGAAGCCTCAATACTTCGATGATCTCTATT
GCAATCTGGTCGACTCAGGCGAGCAGTCCGGCTCGCTGGAAACGCTGCTTGATCGGGTGGCAACCTACAAGGAAAAGACC
GAGGCCCTGAAGGCCAAGATCAAGAAGGCGATGAATTACCCCATTGCCGTGGTGCTGGTTGCAATCATCGTTTCGGCGAT
CCTGCTGATCAAGGTGGTTCCGCAGTTTCAGGACGTCTTCGCAAACTTCGGCGCGGAGCTCCCGGCGTTTACATTGATGG
TGATTGGCTTGTCCGAGGCGCTGCAGGCCTGGTGGCACGTGGTGCTGCTCGTTATGTTTGGGGCAGCCTATGCCTTCAAG
ACAGCCCACGGCAAATCGGAACGGTTTCGCAATGGATTTGACCGTTTTTTGCTCAAGGTACCTGTGGTCGGCGAAATTCT
CTATAAGTCTGCAGTGGCACGCTTTGCGCGCACGCTGGCCACCACCTTTGCTGCCGGTGTGCCGTTGGTCGATGCGCTGG
ACTCGGTGGCCGGGGCGACCGGCAATGTGGTGTTCCGCAACGCGACCATGAAGGTAAAAGCTGATGTTTCCAGTGGTATG
CAGCTGAACTTTTCGATGCGCACTACCGGCACCTTTCCCAGTATGGCGATCCAGATGACGGCGATTGGCGAGGAGTCCGG
CTCTCTTGATGAGATGCTTGCGAAGGTGGCGACGTTTTATGAAGACGAAGTCGACAATATGGTCGACGGGCTGACTGCTC
TGATGGAGCCAATGATCATGGCGGTGCTTGGGGTGCTAGTCGGCGGTTTGATCATCGCTATGTACCTTCCAATTTTCCAG
CTCGGCTCTGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.111

100

0.911
  pilC Acinetobacter baylyi ADP1

58.867

100

0.59
  pilC Acinetobacter baumannii D1279779

58.272

100

0.583
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilG Neisseria meningitidis 44/76-A

43.781

99.259

0.435
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

41.667

97.778

0.407
  pilC Thermus thermophilus HB27

36.591

98.519

0.36