Detailed information NTG0711869

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NPN27_RS04890
• Genome accession: NZ_CP101739
• Coordinates: 1017706..1018572 (+)
• Length: 288 a.a.
• NCBI ID: WP_256518821.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain J15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1012706..1023572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPN27_RS04865 (NPN27_04865)	-	1013257..1013786 (-)	530	Protein_961	REP-associated tyrosine transposase	-
NPN27_RS22065	-	1014002..1014469 (-)	468	WP_272893401.1	pilin	-
NPN27_RS04880 (NPN27_04880)	pilB	1014779..1016482 (+)	1704	WP_256518819.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NPN27_RS04885 (NPN27_04885)	pilC	1016484..1017701 (+)	1218	WP_256518820.1	type II secretion system F family protein	Machinery gene
NPN27_RS04890 (NPN27_04890)	pilD	1017706..1018572 (+)	867	WP_256518821.1	prepilin peptidase	Machinery gene
NPN27_RS04895 (NPN27_04895)	coaE	1018704..1019312 (+)	609	WP_080977605.1	dephospho-CoA kinase	-
NPN27_RS04900 (NPN27_04900)	yacG	1019309..1019506 (+)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
NPN27_RS04905 (NPN27_04905)	-	1019519..1020199 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
NPN27_RS04910 (NPN27_04910)	-	1020256..1021296 (-)	1041	WP_256518823.1	NADP(H)-dependent aldo-keto reductase	-
NPN27_RS04915 (NPN27_04915)	rplM	1021716..1022144 (+)	429	WP_003287302.1	50S ribosomal protein L13	-
NPN27_RS04920 (NPN27_04920)	rpsI	1022160..1022552 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
NPN27_RS04925 (NPN27_04925)	petA	1022808..1023401 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32125.08 Da
• Isoelectric Point: 7.2758

>NTDB_id=711869 NPN27_RS04890 WP_256518821.1 1017706..1018572(+) (pilD) [Stutzerimonas stutzeri strain J15]
MFIDLLASHVLAFVLSAAMLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQGGAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANNFTLFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=711869 NPN27_RS04890 WP_256518821.1 1017706..1018572(+) (pilD) [Stutzerimonas stutzeri strain J15]
ATGTTTATTGATCTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAATGCTCGGTCTGTTGGTTGGCAGCTT
TCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCC
TGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGTTGTCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGGAGGGGCGA
TGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTG
CCGCTCTTGTGGTTAGGGTTGATTGCCAACAACTTTACTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
CGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGGATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCTTCGGTGGTCGGCGCC
GTGCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.455	95.486	0.549
pilD	Vibrio campbellii strain DS40M4	57.143	94.792	0.542
pilD	Acinetobacter baumannii D1279779	51.799	96.528	0.5
pilD	Acinetobacter nosocomialis M2	51.799	96.528	0.5
pilD	Neisseria gonorrhoeae MS11	53.232	91.319	0.486