Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K6J61_RS04890 Genome accession   NZ_AP018769
Coordinates   987532..989898 (+) Length   788 a.a.
NCBI ID   WP_110459267.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 982532..994898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS04865 (CHBNII6_09140) - 982881..984179 (-) 1299 WP_048942662.1 N-acetylmuramoyl-L-alanine amidase -
  K6J61_RS04870 (CHBNII6_09150) tsaE 984187..984663 (-) 477 WP_048942663.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  K6J61_RS04875 (CHBNII6_09160) folK 984739..985221 (-) 483 WP_014550609.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6J61_RS04880 (CHBNII6_09170) pcnB 985230..986588 (-) 1359 WP_110459272.1 polynucleotide adenylyltransferase PcnB -
  K6J61_RS04885 (CHBNII6_09180) dksA 986836..987273 (-) 438 WP_011271805.1 RNA polymerase-binding protein DksA -
  K6J61_RS04890 (CHBNII6_09190) rec2 987532..989898 (+) 2367 WP_110459267.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K6J61_RS04895 (CHBNII6_09200) msbA 989939..991702 (+) 1764 WP_011271803.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K6J61_RS04900 (CHBNII6_09210) lpxK 991775..992773 (+) 999 WP_011271802.1 tetraacyldisaccharide 4'-kinase -
  K6J61_RS04905 (CHBNII6_09220) kdsB 992844..993608 (+) 765 WP_048942664.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89302.85 Da        Isoelectric Point: 9.9916

>NTDB_id=70907 K6J61_RS04890 WP_110459267.1 987532..989898(+) (rec2) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLSQQAQNIT
AQNQVVTFKIQEILHQQDYQTLIATATLENNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
GIGFCLARVVQVFCPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLLLWYRYVPFSLFQWKNRPFSPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWSIYREPE
VSSSTWKIKRPRFFTLNLSKPLLKTDRINVLRCSFGIILMCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVATRADNPHSCVILVDDGKNSVLLTGDAEAKNKQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=70907 K6J61_RS04890 WP_110459267.1 987532..989898(+) (rec2) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATCACAACAAGCTCAAAATATTACC
GCTCAAAATCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGAGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACGGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAAAAAACAAACAGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACTGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTGCTTGGCGCGTGTTGTGCAAGTCTTTTGCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGAGCGGTTGGGTGTTTGCTCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTTCTCCAAAAGTGCGGTGGATTTTTAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTAAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGAGTATTTATCGAGAACCAGAG
GTTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAACTGATCG
AATCAACGTTTTGCGATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGCGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGAATAGCGTTTTGCTAACTGGCGATGCTGAAGCAAAAAATAAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-171)

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

97.208

100

0.972

Multiple sequence alignment