Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NGC85_RS15140 Genome accession   NZ_CP101115
Coordinates   3201000..3202226 (+) Length   408 a.a.
NCBI ID   WP_254732216.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3196000..3207226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS15105 (NGC85_15105) rimP 3196613..3197137 (-) 525 WP_254732213.1 ribosome maturation factor RimP -
  NGC85_RS15125 (NGC85_15125) secG 3197760..3198089 (-) 330 WP_005061069.1 preprotein translocase subunit SecG -
  NGC85_RS15130 (NGC85_15130) tpiA 3198102..3198893 (-) 792 WP_254732214.1 triose-phosphate isomerase -
  NGC85_RS15135 (NGC85_15135) pilB 3199263..3200975 (+) 1713 WP_254732215.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NGC85_RS15140 (NGC85_15140) pilC 3201000..3202226 (+) 1227 WP_254732216.1 type II secretion system F family protein Machinery gene
  NGC85_RS17450 pilD 3202226..3203086 (+) 861 WP_302885508.1 A24 family peptidase Machinery gene
  NGC85_RS15155 (NGC85_15155) coaE 3203090..3203695 (+) 606 WP_169108869.1 dephospho-CoA kinase -
  NGC85_RS15160 (NGC85_15160) - 3203692..3204603 (-) 912 WP_254732217.1 DMT family transporter -
  NGC85_RS15165 (NGC85_15165) rlmB 3204634..3205383 (-) 750 WP_254732218.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NGC85_RS15170 (NGC85_15170) - 3205573..3205899 (-) 327 WP_005050993.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44952.44 Da        Isoelectric Point: 9.8806

>NTDB_id=708749 NGC85_RS15140 WP_254732216.1 3201000..3202226(+) (pilC) [Acinetobacter sp. Z1]
MAAKKAQMMPTFAYEGVDRKGAKVKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVILVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSKWMQEYWFLLIIAIAAVIA
SFLEAKKRSKKFRDLLDKMALKAPIFGDLIYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=708749 NGC85_RS15140 WP_254732216.1 3201000..3202226(+) (pilC) [Acinetobacter sp. Z1]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACTTTTGCTTATGAAGGGGTTGATCGTAAAGGGGCGAAGGTTAAAGGGGA
ACTTCCTGCTCGTAATATGGCTTTAGCGAAAGTCACATTACGAAAGCAAGGTGTTACAATCAAAAATATTCGAGAGAAAC
GTAAAAATATTCTCGAAGGTTTGATGAAAAAGAAAGTCACAACGCTTGATATCACTATTTTCACGCGCCAACTCGCAACT
ATGATGAAAGCAGGCGTACCATTGGTTCAAGGCTTTGAAATTGTTGCTGAAGGCTTAGAAAATCCATCGATGCGTGAAGT
GGTATTAGGCATTAAAGGTGAAGTTGAAGGCGGAAATACCTTTGCAGGTGCATTGAAAAAATATCCGCAATATTTTGATA
ATTTATTCTGCTCATTGGTCGAATCTGGCGAACAATCAGGCGCCTTAGAAACTATGCTTGATCGCGTAGCGATCTATAAG
GAAAAAAGCGAGTTACTTAAACAGAAAATTAAAAAAGCCATGAAATATCCTATTTCGGTAATTTTAGTCGCTGTAATAGT
TACCATCATTTTGATGGTCAAAGTGGTTCCAGTATTCCAGGATCTCTTTAGCTCTTTCGGTGCAGACCTCCCAGCTTTTA
CCAAAATGGTGGTGAATATGTCCAAATGGATGCAAGAATATTGGTTTCTTTTAATCATTGCGATTGCCGCTGTGATAGCA
AGTTTCCTAGAAGCAAAGAAGCGTAGTAAAAAATTTCGTGATCTGCTCGATAAAATGGCACTTAAAGCTCCAATATTCGG
TGATCTGATATATAAAGCGATTATTGCGCGGTATAGCCGCACACTAGCAACAACATTTGCAGCAGGTGTTCCATTAATTG
ATGCACTCGAGTCAACAGCTGGCGCGACCAACAATGTAGTGTATGAAGAAGCCGTGATGAAAATCCGTGAAGATGTTGCG
ACTGGGCAACAGCTTCAATTTGCAATGCGTGTATCAAATCGTTTCCCATCAATGGCAATTCAAATGGTTGCGATTGGTGA
AGAATCTGGTGCTCTAGATAGTATGTTAGATAAAGTGGCAACCCATTATGAAAATGAAGTTGATAATGCTGTCGACGGTC
TTACATCAATGATGGAACCACTGATTATGGCAATCTTAGGCGTTCTTGTTGGTGGCTTGGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.402

100

0.924
  pilC Acinetobacter baylyi ADP1

84.314

100

0.843
  pilC Pseudomonas stutzeri DSM 10701

60.345

99.51

0.6
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.998

99.755

0.429
  pilC Vibrio campbellii strain DS40M4

40.695

98.775

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36