Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NGC85_RS17450 Genome accession   NZ_CP101115
Coordinates   3202226..3203086 (+) Length   286 a.a.
NCBI ID   WP_302885508.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3197226..3208086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS15125 (NGC85_15125) secG 3197760..3198089 (-) 330 WP_005061069.1 preprotein translocase subunit SecG -
  NGC85_RS15130 (NGC85_15130) tpiA 3198102..3198893 (-) 792 WP_254732214.1 triose-phosphate isomerase -
  NGC85_RS15135 (NGC85_15135) pilB 3199263..3200975 (+) 1713 WP_254732215.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NGC85_RS15140 (NGC85_15140) pilC 3201000..3202226 (+) 1227 WP_254732216.1 type II secretion system F family protein Machinery gene
  NGC85_RS17450 pilD 3202226..3203086 (+) 861 WP_302885508.1 A24 family peptidase Machinery gene
  NGC85_RS15155 (NGC85_15155) coaE 3203090..3203695 (+) 606 WP_169108869.1 dephospho-CoA kinase -
  NGC85_RS15160 (NGC85_15160) - 3203692..3204603 (-) 912 WP_254732217.1 DMT family transporter -
  NGC85_RS15165 (NGC85_15165) rlmB 3204634..3205383 (-) 750 WP_254732218.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NGC85_RS15170 (NGC85_15170) - 3205573..3205899 (-) 327 WP_005050993.1 pyrimidine/purine nucleoside phosphorylase -
  NGC85_RS15175 (NGC85_15175) recN 3206253..3207914 (+) 1662 WP_254732219.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32086.56 Da        Isoelectric Point: 6.8120

>NTDB_id=708760 NGC85_RS17450 WP_302885508.1 3202226..3203086(+) (pilD) [Acinetobacter sp. Z1]
MQELLSYFIGNPTALYIAVGLFSLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHSEQPIIDEHQLTLSQPASTCPKCKSP
IRWYQNIPVISWLILRGKCGACDNPISIRYPFIELLTMICSLIVVVVFGATIQMLFGLILTWTLITLTFIDFDTQLLPDR
FTLPLAALGLGINSFAIYTTAHVAIWGYLIGFLCLWIVYYVFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIILMKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKMYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=708760 NGC85_RS17450 WP_302885508.1 3202226..3203086(+) (pilD) [Acinetobacter sp. Z1]
ATGCAAGAATTACTTTCTTATTTTATCGGAAACCCAACTGCGCTTTATATTGCAGTTGGGCTTTTTAGTTTATGTATCGG
TAGTTTTTTAAATGTTGTAATTTTTAGAACTCCTAAAATGATGGAACAAGAATGGCATCAAGAATGTCAAATGCTACTAC
ATTCTGAACAACCGATTATAGATGAACACCAATTAACTTTAAGCCAACCGGCATCCACCTGTCCTAAATGTAAATCACCT
ATCCGCTGGTATCAGAATATCCCTGTCATCAGTTGGCTTATCTTGCGCGGAAAGTGTGGCGCTTGTGACAATCCAATTAG
TATTCGCTATCCGTTTATTGAACTATTAACCATGATTTGTTCATTGATCGTTGTGGTTGTATTTGGTGCGACCATCCAAA
TGCTGTTTGGTTTGATTCTCACATGGACACTCATCACCTTAACTTTTATTGATTTCGATACTCAGCTTCTACCTGATCGA
TTTACATTACCTTTAGCTGCATTAGGCTTAGGAATTAACAGCTTTGCAATTTATACGACGGCTCATGTTGCTATTTGGGG
TTACTTAATTGGCTTCCTATGTCTTTGGATTGTTTATTATGTTTTCAAGATCATAACTGGCAAAGAAGGTATGGGTTACG
GTGATTTCAAGTTACTCGCTGCTTTGGGCGCTTGGATGGGTCCGATGATGTTACCTTTAATTGTATTATTGTCTTCTATG
GTTGGCGCAATCATTGGTATCATCTTAATGAAGATGCGAGGTGAAAATCAGCCTTTTGCATTTGGTCCTTATATTGCAAT
CGCAGGTTGGATTGCTTTTCTATGGGGTGATCAAATTATGAAAATGTATTTGGGTGGTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

82.168

100

0.822
  pilD Acinetobacter nosocomialis M2

81.818

100

0.818
  pilD Vibrio cholerae strain A1552

52.06

93.357

0.486
  pilD Vibrio campbellii strain DS40M4

48.772

99.65

0.486
  pilD Neisseria gonorrhoeae MS11

46.154

95.455

0.441