Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NGC85_RS01605 Genome accession   NZ_CP101115
Coordinates   344498..346675 (+) Length   725 a.a.
NCBI ID   WP_254804634.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339498..351675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01585 (NGC85_01585) comM 341518..342576 (+) 1059 WP_254804633.1 pilus assembly protein PilM Machinery gene
  NGC85_RS01590 (NGC85_01590) pilN 342576..343220 (+) 645 WP_005059945.1 PilN domain-containing protein Machinery gene
  NGC85_RS01595 (NGC85_01595) comO 343217..343951 (+) 735 WP_005052213.1 type 4a pilus biogenesis protein PilO Machinery gene
  NGC85_RS01600 (NGC85_01600) pilP 343954..344481 (+) 528 WP_169109293.1 pilus assembly protein PilP Machinery gene
  NGC85_RS01605 (NGC85_01605) pilQ 344498..346675 (+) 2178 WP_254804634.1 type IV pilus secretin PilQ Machinery gene
  NGC85_RS01610 (NGC85_01610) aroK 346686..347252 (+) 567 WP_155757334.1 shikimate kinase AroK -
  NGC85_RS01615 (NGC85_01615) aroB 347266..348348 (+) 1083 WP_254804635.1 3-dehydroquinate synthase -
  NGC85_RS01620 (NGC85_01620) - 348368..349252 (+) 885 WP_254804636.1 hypothetical protein -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 78792.72 Da        Isoelectric Point: 7.3205

>NTDB_id=708718 NGC85_RS01605 WP_254804634.1 344498..346675(+) (pilQ) [Acinetobacter sp. Z1]
MKKQFKDSLFGEAKTMNHAFRQFSMGAVAIAMMQIASAQVSMTNIVPMNLAEQGTEIRVMFNGLPPQPQAYQLEQPARLI
LDFDKAQQTLKQSSIPVSTAEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSARPSATSATQTIARQSQQG
VSNIGFQRGNQGEGLVVIDLLGGNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQS
AGSYEYMAYQAENKLTISLKRPEDKSPAKAKSQIYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKD
VPWDQALDIVLKTKNLDKRRNGSVIWIAPVSELIKSEEEEAKAIAQSVKLAPIQSEYIKLSYAKAADILKLIEDSRDGKG
AMANRTSNSDSLALESLLSPRGSAVADTRTNTLIVNDTAQNIDKIRKMVDLLDVSVKQVMIEARIVSASTDFTKEMGVKW
GILSQGIGRNNDLLVGGSDTTLWNLREPKKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAV
QADGFGEVISTPKVMTADKQAAKIESGTQIPYASSSGGGANAVPKTEFINATLSLDVTPSITPEGKVMMKLNITKDAPGQ
PTPTGQLTINKNSIDTNVLVDNGETIVLGGIFEQENLNSQTKVPFLGDIPYLGKLFRRDTKKDSKRELLIFVTPRIVNDT
LTRNH

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=708718 NGC85_RS01605 WP_254804634.1 344498..346675(+) (pilQ) [Acinetobacter sp. Z1]
ATGAAAAAACAGTTTAAAGATTCTTTATTTGGGGAAGCGAAGACCATGAATCATGCATTCCGTCAATTTTCTATGGGTGC
TGTCGCTATTGCTATGATGCAAATAGCATCCGCACAGGTCAGTATGACGAATATTGTACCTATGAATTTAGCTGAGCAAG
GAACGGAAATTCGAGTCATGTTTAATGGCTTGCCTCCGCAGCCACAAGCTTATCAACTGGAACAACCTGCACGCTTAATT
TTAGATTTTGATAAAGCACAACAGACATTGAAACAAAGTTCAATCCCTGTATCTACGGCAGAAGCGAGTTCTGTCGAGGT
AGCTGCTGATGATCAACGCTCACGTGTTATTGTGAATTTGAAAGATGCGGGTGCATTTACAACACGTGTCGAAGGTAATA
CCTTTGTTTTAAAAATCAATTCGGCTCGACCTTCAGCAACAAGTGCAACTCAGACAATTGCGCGGCAGTCTCAGCAAGGG
GTTTCTAATATTGGTTTTCAGAGAGGAAATCAAGGTGAAGGTTTAGTTGTTATTGATTTATTGGGTGGTAACACACCAGT
TGATGTACAGCAGCAAGGTAGTAAGATTGTTGTTCGAACCATGGGAAATAAAATTCCTACCCATCTTGCACGTCGTTTGA
ATACCAATGATTTTGCAACGCCTGTTGCCAGTATTGATGCTTATAATGATAAAGGTAATGGCGTTATTACTATTCAGTCT
GCAGGTAGCTATGAATATATGGCTTATCAGGCTGAAAATAAATTAACCATTAGCCTAAAACGCCCTGAAGATAAGTCGCC
TGCAAAAGCAAAATCTCAAATCTATACTGGAAACAAGATTTCCCTAGATTTTCAGGATATTGAAGTCCGTCGAGTTCTTC
AGTTACTTGCTGATTTTACCGGTATCAACATGGTGGCTGCTGACACTGTACAGGGTAATATTACACTACGTTTAAAAGAT
GTGCCTTGGGACCAAGCGTTAGATATTGTGCTTAAAACCAAAAATTTGGATAAACGTCGTAATGGAAGCGTAATTTGGAT
TGCTCCAGTTTCTGAGTTGATAAAATCTGAAGAAGAAGAAGCCAAAGCCATTGCACAGAGTGTCAAGTTGGCGCCGATTC
AATCTGAGTATATTAAATTAAGTTATGCGAAAGCAGCCGATATATTGAAATTAATTGAAGATTCTCGTGATGGTAAAGGG
GCGATGGCAAATCGGACATCGAACTCAGATTCTCTTGCCTTGGAAAGTTTGTTAAGTCCTCGTGGTAGTGCTGTCGCAGA
TACAAGAACAAATACTTTGATTGTAAATGATACTGCTCAGAATATTGATAAAATAAGAAAAATGGTGGATTTGCTTGATG
TTTCAGTAAAGCAAGTCATGATTGAAGCTAGAATTGTAAGTGCGAGTACTGACTTTACCAAAGAAATGGGGGTGAAGTGG
GGTATTTTGTCGCAAGGGATTGGCAGAAATAATGATTTATTGGTGGGTGGGAGTGACACGACGCTGTGGAATTTAAGGGA
GCCTAAAAAAGATAGTGATACTGGTGGTTGGAAATATGAGATTGAACGTCCTGATAATCTAAATGTGGATTTAGGGGCTG
TGACTCCTGGTGCAAGTCGTATTGCTTTTGGTTTGATTAGTTTGTCTGATTTTATGTTGGATTTAGAGCTTTCGGCAGTT
CAGGCAGATGGTTTCGGTGAAGTGATTTCAACACCGAAGGTTATGACCGCTGATAAACAAGCTGCTAAAATTGAGTCTGG
TACGCAAATTCCATATGCATCTTCTTCAGGGGGGGGCGCAAATGCAGTACCAAAAACTGAGTTTATTAACGCTACGTTAA
GTCTGGATGTCACACCAAGTATTACTCCAGAAGGTAAGGTAATGATGAAGTTAAACATTACCAAAGATGCACCAGGACAA
CCGACACCTACAGGTCAGTTAACCATTAATAAAAATTCGATTGATACCAATGTGCTTGTAGACAATGGTGAAACAATTGT
TTTGGGTGGGATTTTTGAGCAAGAAAATCTCAATTCTCAAACAAAAGTTCCTTTTCTTGGTGATATTCCTTACTTAGGTA
AATTGTTCCGCCGTGATACAAAGAAAGATAGCAAACGTGAACTTTTAATTTTTGTGACACCGAGAATTGTTAATGACACT
TTGACGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-349)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-458)

AMIN domain (AMIN)

(52-135)

Bacterial type II and III secretion system protein (Secretin)

(559-717)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.033

99.862

0.739
  pilQ Acinetobacter baumannii strain A118

73.895

99.862

0.738
  comQ Acinetobacter baylyi ADP1

70.391

98.759

0.695
  pilQ Pseudomonas aeruginosa PAK

41.096

100

0.414
  pilQ Legionella pneumophila strain ERS1305867

37.464

96.828

0.363
  pilQ Legionella pneumophila strain Lp02

37.322

96.828

0.361