Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NGC85_RS01600 Genome accession   NZ_CP101115
Coordinates   343954..344481 (+) Length   175 a.a.
NCBI ID   WP_169109293.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338954..349481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01585 (NGC85_01585) comM 341518..342576 (+) 1059 WP_254804633.1 pilus assembly protein PilM Machinery gene
  NGC85_RS01590 (NGC85_01590) pilN 342576..343220 (+) 645 WP_005059945.1 PilN domain-containing protein Machinery gene
  NGC85_RS01595 (NGC85_01595) comO 343217..343951 (+) 735 WP_005052213.1 type 4a pilus biogenesis protein PilO Machinery gene
  NGC85_RS01600 (NGC85_01600) pilP 343954..344481 (+) 528 WP_169109293.1 pilus assembly protein PilP Machinery gene
  NGC85_RS01605 (NGC85_01605) pilQ 344498..346675 (+) 2178 WP_254804634.1 type IV pilus secretin PilQ Machinery gene
  NGC85_RS01610 (NGC85_01610) aroK 346686..347252 (+) 567 WP_155757334.1 shikimate kinase AroK -
  NGC85_RS01615 (NGC85_01615) aroB 347266..348348 (+) 1083 WP_254804635.1 3-dehydroquinate synthase -
  NGC85_RS01620 (NGC85_01620) - 348368..349252 (+) 885 WP_254804636.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19333.55 Da        Isoelectric Point: 9.7095

>NTDB_id=708717 NGC85_RS01600 WP_169109293.1 343954..344481(+) (pilP) [Acinetobacter sp. Z1]
MNKNKLLLALFVGIGLVGCDSRIDAVNQQMADIRNQPPLPIEPAPIFTPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKGNDTIALIQTPDRQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=708717 NGC85_RS01600 WP_169109293.1 343954..344481(+) (pilP) [Acinetobacter sp. Z1]
ATGAATAAAAATAAATTATTACTTGCTTTGTTCGTTGGGATTGGCTTGGTTGGTTGTGACTCGCGTATTGATGCGGTCAA
TCAACAAATGGCTGATATTCGTAATCAACCGCCATTACCGATTGAGCCTGCGCCAATTTTCACTCCTGTGCCGTTATTTA
ATTATTCTGCTCATCAGTTAAAAAGCCCATTTATGCCAAGCTCTTTAGCCGCAGAATTGAAAATCATGGCAGGAAAACGT
GTTTATCCGAATTTTAATCGTCAACCACAGCCACTTGAAAGCTACGCTCTTGAATCATTAAATATGAAAGGTAGTATGCG
TGGCAAAGGAAATGACACGATTGCATTAATTCAAACACCTGATCGACAAATTGAGCGTGTACAGGTCGGAAGTTATTTGG
GGATGAATCAAGGGCGAATTATTAAAATCAGCCCGACTCAGATAGATTTGGTTGAAATTGTTCCAGATGGGCGAGAAGGT
TATGTGGAGAGACCAAGAACACTCGTTTTAATCGGGCCAGCACCGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

81.714

100

0.817
  comL Acinetobacter baylyi ADP1

72.674

98.286

0.714