Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NGC85_RS01595 Genome accession   NZ_CP101115
Coordinates   343217..343951 (+) Length   244 a.a.
NCBI ID   WP_005052213.1    Uniprot ID   N9E9F2
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338217..348951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01580 (NGC85_01580) ponA 338767..341355 (-) 2589 WP_254804632.1 penicillin-binding protein PBP1a -
  NGC85_RS01585 (NGC85_01585) comM 341518..342576 (+) 1059 WP_254804633.1 pilus assembly protein PilM Machinery gene
  NGC85_RS01590 (NGC85_01590) pilN 342576..343220 (+) 645 WP_005059945.1 PilN domain-containing protein Machinery gene
  NGC85_RS01595 (NGC85_01595) comO 343217..343951 (+) 735 WP_005052213.1 type 4a pilus biogenesis protein PilO Machinery gene
  NGC85_RS01600 (NGC85_01600) pilP 343954..344481 (+) 528 WP_169109293.1 pilus assembly protein PilP Machinery gene
  NGC85_RS01605 (NGC85_01605) pilQ 344498..346675 (+) 2178 WP_254804634.1 type IV pilus secretin PilQ Machinery gene
  NGC85_RS01610 (NGC85_01610) aroK 346686..347252 (+) 567 WP_155757334.1 shikimate kinase AroK -
  NGC85_RS01615 (NGC85_01615) aroB 347266..348348 (+) 1083 WP_254804635.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27388.94 Da        Isoelectric Point: 4.7614

>NTDB_id=708716 NGC85_RS01595 WP_005052213.1 343217..343951(+) (comO) [Acinetobacter sp. Z1]
MNLDKSDDLNQDTVAAKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKITTWIFIFLAVGALGYFVVIKSQLESIANAQAKE
QSLLNEFREKESKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIDATGDYHAFGAFVTGIAALPRIVTLHDFTVEASADKEKKSDIPVVNYSIKAKTYRYVGADEQANADVAAQPATNPPA
QGGK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=708716 NGC85_RS01595 WP_005052213.1 343217..343951(+) (comO) [Acinetobacter sp. Z1]
ATGAACCTAGATAAATCAGATGATTTAAATCAAGACACCGTTGCTGCAAAGAAAAAGAAAATGACGGTGGAGCAGTTCTT
CCAACAGTTTAATACTTTGGATATGAATAATTATGGCAGTTGGCCTTTATCTGTCAAAATTACCACTTGGATTTTTATTT
TCTTAGCTGTTGGCGCTCTCGGTTATTTTGTAGTGATTAAGTCGCAATTAGAATCAATTGCGAACGCGCAAGCGAAAGAA
CAAAGCTTACTCAATGAGTTTCGTGAAAAAGAATCTAAGTTGCGTAATTTGCAACAATATCAAGCACAATTGCAAGAGAT
GGAAGCGAACTTTAATCAGCAACTCGAACAGCTGCCTAAAGAAACTGAGATTCCGAGTTTAGTCGAAGACATTAATTTGA
CAGGTGTTAATTCTGGGCTGAAATTTAAGAATATCCGCTTAGAAAATGAAGTGAAGCAAGAGTTTTTTATCGAGCAGCCG
ATTAGTATTGATGCTACAGGTGATTATCATGCTTTTGGTGCTTTTGTGACAGGAATTGCAGCATTACCACGTATTGTAAC
TCTGCATGACTTTACTGTTGAAGCATCAGCAGATAAAGAGAAAAAGTCTGATATTCCAGTTGTTAATTATTCAATAAAAG
CTAAAACCTATCGTTATGTCGGTGCTGATGAACAAGCGAATGCTGATGTTGCAGCTCAACCTGCTACAAATCCACCTGCT
CAAGGAGGAAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9E9F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

74.18

100

0.742
  pilO Acinetobacter baumannii D1279779

73.77

100

0.738