Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   H7678_RS03905 Genome accession   NZ_AP023393
Coordinates   757160..760789 (+) Length   1209 a.a.
NCBI ID   WP_280641369.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752160..765789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS03895 (SDSE89_07270) - 752850..753761 (-) 912 WP_065355259.1 neutral zinc metallopeptidase -
  H7678_RS03900 (SDSE89_07280) rexB 753936..757160 (+) 3225 WP_065355260.1 ATP-dependent nuclease subunit B Machinery gene
  H7678_RS03905 (SDSE89_07290) rexA 757160..760789 (+) 3630 WP_280641369.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  H7678_RS03910 (SDSE89_07300) - 760949..762064 (+) 1116 WP_046177169.1 aminotransferase -
  H7678_RS03915 (SDSE89_07310) - 762133..762945 (+) 813 WP_048327378.1 transporter substrate-binding domain-containing protein -
  H7678_RS03920 (SDSE89_07320) rpsU 763035..763211 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  H7678_RS03925 (SDSE89_07330) mscL 763343..763717 (-) 375 WP_003059118.1 large conductance mechanosensitive channel protein MscL -
  H7678_RS03930 (SDSE89_07340) dnaG 763845..765659 (+) 1815 WP_048327375.1 DNA primase -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 138270.70 Da        Isoelectric Point: 5.3012

>NTDB_id=70833 H7678_RS03905 WP_280641369.1 757160..760789(+) (rexA) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MSFDPFLSPSAIAQLQEKETQSSQAQKRTPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFT
VKAATELRERIEKKLYAEIAKTSDSLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISPQFRIMQDKAEQDILK
RDVFSKLFEEFMTQDDPSLFKALVKNFSGNRKDASSFREVVYSCYAFSQSTENPKQWLEETFLKAAQTYQGLEDVPEQEI
QLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPYLYGRQGISRLAKDLTALLPTGNDVT
VAGIKYPVFKSLHQKLIRFRHLETILSYQPESLPLLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIR
QTYQDQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQTYPEQGKLILLKENFR
SQTEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLDIEDADGISPSEVTIVAKE
IIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSP
MFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFND
RFYFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASSKQAVNLMTIHKSKGLEF
KYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVA
MTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQ
SQQLLQPDDLKDNRQSADITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNAFTLP
EFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALDLQKVEQFFTETALGKRFQTYSTNLYRE
APFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMG
GSELAIVTL

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=70833 H7678_RS03905 WP_280641369.1 757160..760789(+) (rexA) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATATCATTTGACCCTTTTTTAAGTCCAAGTGCCATTGCGCAATTACAAGAAAAAGAAACTCAAAGTAGTCAAGCGCAAAA
AAGAACCCCAGAACAAATCGAAGCTATTTATACCAGTGGGCAAAATATCTTGGTGTCAGCCTCAGCTGGATCTGGAAAAA
CCTTTGTTATGGTGGAACGGATTCTTGATAAAATCCTAAGGGGTGTTTCAGTAGATAGACTTTTTATTTCAACCTTTACG
GTCAAAGCCGCTACGGAGTTACGTGAACGTATTGAAAAGAAACTGTATGCGGAAATTGCGAAAACCAGTGATTCGTTGCT
AAAAGCTTATCTAACAGACCAATTACAAGCTTTGTCACAAGCTGATATTGGGACGATGGATGCTTTTGCTCAAAAAGTCC
TCATCCGTTACGGGTACAGCATTGGTATTTCCCCTCAATTTCGTATTATGCAAGATAAGGCGGAGCAAGACATTCTAAAG
CGAGATGTTTTTAGCAAATTATTTGAAGAATTTATGACTCAAGATGATCCGTCCTTGTTCAAGGCATTGGTCAAAAATTT
TTCCGGTAATCGTAAAGATGCTTCTTCGTTTAGAGAAGTCGTCTATAGTTGCTACGCCTTTAGTCAATCTACTGAAAATC
CGAAACAGTGGTTAGAAGAAACCTTTCTAAAAGCTGCTCAAACCTATCAAGGGCTTGAAGATGTCCCTGAACAAGAGATT
CAACTCTTACTGTCAACCATGCAAGATACCGCAGATCAGTTAAGAGATGTGACTGACATGGAAGATTATGGTCAGCTGAC
AAAAGCTGGGAAACCAACAGCCAAATACGTCAAACATTTGGCCATGATCGAGAAGCTTTACGAATGGGCGCGTGACTTTC
CTTACCTCTATGGGAGACAGGGGATAAGCCGCTTGGCAAAGGACCTGACAGCTCTTTTGCCGACTGGAAATGATGTGACA
GTGGCTGGGATAAAATACCCTGTTTTCAAGAGTTTACACCAAAAGCTCATCCGATTTAGGCACTTAGAAACCATTTTAAG
CTATCAGCCAGAAAGCCTTCCCTTATTAGAACTTTTGAAGATTGTTGTGCTTGCTTTTTCGAAGGCTTATCTGGATGCCA
AAAAACAAGAAGGTGCTTTTGAATTTTCAGATATTGCCCATTTTGCCATACAGATTTTAGAAGAAAACCCTGATATTAGG
CAGACATATCAAGACCAGTATCATGAAGTCATGGTTGATGAGTATCAGGATAATAATCATATGCAAGAACGGCTGTTGAC
TTTATTATCAAATGGACATAACCGTTTTATGGTTGGTGATATTAAACAATCCATTTACCGTTTTCGACAGGCAGATCCTC
AGATTTTCAATCAAAAATTCAAGGACTATCAAACCTATCCTGAGCAAGGAAAACTCATTTTATTGAAAGAGAATTTCCGG
AGTCAAACAGAAGTTTTAGAAGCTAGCAATGCTGTCTTTACTCATTTAATGGATGAATCCCTAGGAGATATTTTGTATGA
TGAGCAGCATCAGTTGGTGGCAGGTAGCGTTGGTCAAAAAATTGCTTCCCCAGAGCATCGTGCTAAGCTCCTGCTTTATA
ACACCGATCACGAAGATCAACTTGACATAGAAGATGCGGATGGCATTTCGCCTAGTGAAGTGACCATCGTTGCTAAAGAA
ATCATTAGGTTACACAATGAGCAACACGTACCTTTTGAGGATATAACCCTCTTAGTATCATCTAGAACAAGAAATGATGC
CATTTTTCATACCTTTAACCAATACGGTATTCCGCTTGTGGCAGATGGTGGTCAGCAAAATTACCTTAAGTCAGTTGAAG
TAATGGTGATGTTGGATACTTTACGTACTATTAATAATCCAAGAAATGATTATGCCTTGGTCGCCCTATTGCGTTCACCG
ATGTTTGCTTTTGATGAAGATGAACTGACTAGGCTAGCCCTCCAACAAGGAGACGACAAAGAAGCAGATTGCCTCTACGA
TAAACTGGAGAGAGCATGCCTTGGCACAGGAACACACCCTGAGTTGGTCCATCAAGACCTAAAACTAAAACTAAGCAGGT
TTATAGAGACCTTAAAAAGCTGGCGCCGTTACGCTAAAATCAGGTCGCTCTATGATCTCATTTGGAAAATTTTCAACGAC
CGTTTCTATTTTGACTTTGTGGGTAGTCAAGCTAAAGCAGAACAGGCACAAGCTAATTTATATGCCTTAGCACTTCGAGC
TAATCAGTTTGAACAATCAGGTTACAAAGGTCTCTCGCGTTTTATTGGCATGATTGACAAGGTGTTGGAAACACAAAATG
ATTTAGCCGATGTTGAGGTAGCTAGCTCTAAACAAGCGGTTAATCTGATGACTATTCACAAGTCCAAGGGATTGGAATTC
AAGTATGTCTTTCTCCTCAACTGTGATAAGCGTTTTGCCATGACAGATGTCCATGCGCCATTTATTTTAAGCCGTCAACA
GGGCATCGGTATTAAGTATCTAGCAGATGTCAAAGACGTTCTGGAAGAAAAAACGTTACCTTCAGTGAAAGTGAGTATGG
AAACTCTCCCCTATCAACTCAATAAACAAGAGCTGCGTTTGGCGACTCTGTCTGAGCAAATGCGCTTACTCTATGTTGCT
ATGACACGGGCTGAAAAGCAAATCTATCTGATAGGCAAGGCAAGCAAGGAGAAAAGTCAAGAATTCACCGATGGCAAACG
CTCGGGAAATCATTTGCCTTTAGCTCTGCGTGAGCGACTAATGTCCTTCCAAGATTGGCTTTTAGCGATAGCAGATACCT
TCACCGCAGAAGATCTCCATTTTGATGTTCAGTTTATTGAAGAAAGTGAATTGAGTCCAGAAGCTATTGGTCATCTACAG
AGTCAACAGCTCTTACAACCAGATGACCTCAAAGACAATCGTCAGTCAGCAGATATTACGAGAGCCATTGACATGCTTAA
TAAGGTATCTCAACTTAATGAACGCTATGAAGCTGCCATTCACCTACCAACAGTCCGAACGCCAAGCCAACTAAAAGCTG
CTTATGAGCCCCTGTTGGATTCAGATGGCGTCGAGGTCATGGAAAAAAGTTATCGGACACTCAATGCATTTACCTTACCT
GAATTTTCAAAGCAAGTTAAAGTTGAAGCTAGTCAGGTAGGGTCAGCTCTTCATCGACTCATGCAAGCCATCCCTTTAAC
GAAGCCAATCAGTTTGGCAACAATTGCCCAAGCGTTGGAAGAAATAGAAGCTGAAGCAGTGGTCAAAGCAGCCCTTGATT
TACAAAAGGTAGAACAGTTCTTTACTGAAACGGCTTTAGGAAAAAGGTTTCAAACCTACTCGACTAACCTTTACCGAGAA
GCTCCATTTGCCATCCTCAAGAAAGACCCTCTCAGCCAAGAAGATTATGTCATTCGTGGGATTATAGATGCCTTTCTCTT
GTTTGAAGATCATATCGAATTGATAGACTACAAAACAGATAGGTATCGTCATCCGAGTGACTTAAAAACACGCTATCAAC
AACAACTGGAATTATATGCAGAAGCGCTTAGCCAGACCTATGGACTTCCTGTAACCAAAAAGTACTTGGTGCTGATGGGC
GGATCAGAGTTGGCTATTGTGACGCTTTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1039-1188)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.326

71.712

0.368

Multiple sequence alignment