Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H7678_RS04295 Genome accession   NZ_AP023393
Coordinates   839548..841293 (+) Length   581 a.a.
NCBI ID   WP_003060992.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 834548..846293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS04275 (SDSE89_08030) - 835010..835390 (+) 381 WP_003056276.1 DUF1149 family protein -
  H7678_RS04280 (SDSE89_08040) - 835390..836238 (+) 849 WP_003056308.1 DegV family protein -
  H7678_RS04285 (SDSE89_08050) - 836358..837566 (+) 1209 WP_012766833.1 CCA tRNA nucleotidyltransferase -
  H7678_RS04290 (SDSE89_08060) - 837563..839440 (+) 1878 WP_003062431.1 ABC-F family ATP-binding cassette domain-containing protein -
  H7678_RS04295 (SDSE89_08070) rcrP 839548..841293 (+) 1746 WP_003060992.1 ABC transporter ATP-binding protein Regulator
  H7678_RS04300 (SDSE89_08080) rcrQ 841293..843065 (+) 1773 WP_003061906.1 ABC transporter ATP-binding protein Regulator
  H7678_RS04305 (SDSE89_08090) gdhA 843255..844604 (+) 1350 WP_003056314.1 NADP-specific glutamate dehydrogenase -
  H7678_RS04310 (SDSE89_08100) - 844729..845139 (+) 411 WP_003062330.1 peptide deformylase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 65256.94 Da        Isoelectric Point: 5.6010

>NTDB_id=70834 H7678_RS04295 WP_003060992.1 839548..841293(+) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MGLIWSYLSSKPKWLALDILGGLLFVLVNLGLPTILARMIDQGIMQQDTKALYGWTLVMFVIIVLGVLGRIILSYASGKL
TTTMIKELRNDMYRQLQDYSHTEYEKIGVASLVTRMTSDAFVLMQFAEMSLRLGVVTPLMMIFSVLMIFLTSPSLAWIVA
VSMPFLVLVVVYVVVKTRPLSEKQQESLDHINQLVRENLTGLRVIRAFSREAFQQERFDERNQEYAGISKRLFTLTGLTE
PLFVQIIIAMIVAIVWFALDPLAKGQIQIGDLVAFIEYSFHALFSFLMFANLFTMYPKMAVSSKRIKEVMDMPISISKNE
DGVTETLTRGYLEFDNVTFAYPGETESPVLHNISFKTKPGETIAFIGSTGSGKSSLVNLIPRFYDVTFGRILVDGVDVRD
YQLKSLRAKIGFIPQKALLFTGTIEDNLKYGKADASYWELDEATDVSQARAFIASREKGYQTHLAEAGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYQTDAALRKRLKEVTEEATVLIVAQRVGTIMDADQIIVLDQGEIIGRGKHEELMATNA
IYREIADSQLNKGNLMEEEVD

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=70834 H7678_RS04295 WP_003060992.1 839548..841293(+) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGGGGCTGATTTGGTCGTATTTATCATCAAAGCCTAAGTGGTTGGCTTTGGACATTTTAGGTGGTCTATTATTTGTTCT
GGTTAATTTAGGATTGCCCACTATTTTAGCTCGGATGATAGACCAAGGAATTATGCAGCAGGATACCAAAGCCTTATATG
GCTGGACATTGGTCATGTTTGTCATTATTGTGTTAGGTGTTCTTGGTCGAATTATCTTATCCTATGCATCTGGTAAGTTA
ACGACAACCATGATCAAGGAGCTGCGCAATGACATGTATCGTCAGTTGCAGGATTACTCTCATACAGAATATGAAAAAAT
TGGGGTTGCTTCTTTGGTTACCCGAATGACAAGTGATGCCTTTGTGCTCATGCAGTTTGCTGAAATGTCTTTACGTTTAG
GAGTAGTGACGCCCTTAATGATGATTTTTTCAGTGCTGATGATTTTCTTGACAAGTCCATCGTTAGCATGGATTGTGGCG
GTATCCATGCCTTTTTTGGTGCTGGTTGTTGTTTATGTCGTCGTCAAAACAAGGCCTCTCTCTGAAAAACAACAAGAAAG
TCTAGACCACATTAATCAGTTAGTCAGAGAAAATTTGACTGGCTTGCGCGTGATTAGAGCCTTTTCGAGAGAAGCCTTTC
AACAGGAACGTTTTGATGAGCGTAATCAAGAATACGCCGGCATTTCTAAACGTCTCTTCACCTTAACAGGATTGACAGAA
CCGCTATTTGTACAAATCATTATTGCCATGATTGTAGCCATTGTTTGGTTTGCCCTAGATCCTTTGGCTAAGGGACAAAT
TCAAATTGGGGATTTGGTAGCCTTTATCGAGTATAGTTTTCATGCCCTTTTTTCGTTTTTGATGTTTGCTAATCTCTTTA
CCATGTATCCTAAAATGGCAGTTTCCAGCAAACGGATCAAAGAAGTCATGGACATGCCAATCTCTATTTCTAAAAATGAA
GATGGGGTAACAGAGACCTTGACAAGAGGTTACCTCGAATTTGACAATGTCACCTTTGCCTATCCTGGAGAAACAGAAAG
TCCTGTTCTACATAACATTTCTTTTAAAACCAAGCCTGGGGAAACCATCGCTTTTATTGGCTCAACAGGGTCAGGAAAAT
CATCCTTGGTGAATTTAATTCCTCGATTTTACGACGTGACGTTTGGGAGAATCTTGGTCGATGGGGTAGATGTCAGAGAT
TATCAGTTAAAATCTCTTCGTGCTAAAATTGGTTTCATCCCACAAAAAGCTCTGCTATTTACAGGAACTATCGAAGACAA
TTTAAAATATGGTAAGGCAGATGCTAGCTATTGGGAATTAGATGAAGCTACGGATGTGTCTCAAGCTAGAGCATTTATTG
CTAGCCGCGAAAAAGGCTATCAGACCCATCTAGCAGAAGCAGGAAGCAATTTATCAGGTGGTCAGAAACAACGGCTATCG
ATTGCCCGTGCGGTTGTTAAAAAACCCGATATTTATATCTTTGATGATTCTTTTTCGGCACTGGATTACCAAACCGATGC
TGCTTTAAGGAAGCGCCTGAAAGAAGTAACAGAGGAAGCGACTGTTTTGATTGTAGCTCAACGGGTTGGGACTATCATGG
ATGCCGATCAAATCATCGTTCTAGATCAAGGTGAAATTATCGGTCGAGGCAAGCATGAGGAATTGATGGCAACCAATGCT
ATTTACCGTGAAATTGCTGATTCGCAATTAAACAAAGGAAATCTCATGGAAGAGGAGGTGGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(26-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.338

91.738

0.37

Multiple sequence alignment