Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H7678_RS04300 Genome accession   NZ_AP023393
Coordinates   841293..843065 (+) Length   590 a.a.
NCBI ID   WP_003061906.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 836293..848065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS04285 (SDSE89_08050) - 836358..837566 (+) 1209 WP_012766833.1 CCA tRNA nucleotidyltransferase -
  H7678_RS04290 (SDSE89_08060) - 837563..839440 (+) 1878 WP_003062431.1 ABC-F family ATP-binding cassette domain-containing protein -
  H7678_RS04295 (SDSE89_08070) rcrP 839548..841293 (+) 1746 WP_003060992.1 ABC transporter ATP-binding protein Regulator
  H7678_RS04300 (SDSE89_08080) rcrQ 841293..843065 (+) 1773 WP_003061906.1 ABC transporter ATP-binding protein Regulator
  H7678_RS04305 (SDSE89_08090) gdhA 843255..844604 (+) 1350 WP_003056314.1 NADP-specific glutamate dehydrogenase -
  H7678_RS04310 (SDSE89_08100) - 844729..845139 (+) 411 WP_003062330.1 peptide deformylase -
  H7678_RS04315 (SDSE89_08110) - 845327..847351 (-) 2025 WP_065355314.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 66009.47 Da        Isoelectric Point: 5.7845

>NTDB_id=70835 H7678_RS04300 WP_003061906.1 841293..843065(+) (rcrQ) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MAEQHVFKRVWTYLRAYRGLIFLAVFLKIISAVMSVLEPFVLGLVITELSSNLLDMAKGIEGAGINTSYIAFLLLVYFIR
ALCYEIGAYGSNYVMTKAVQSTIRDLRQALSQKINRIPVSYFDQHQFGDMLGRFTSDVETVSNALQQSFLQIVNAFLTIF
LVMGMVLYLNLTLALIVIVAIPIIYASSQFILKKSQPYFKEQAKVLGEMNGFVQENLSGFNVLKLYGREEASEQAFHQIT
EHLQEVGFKASFLSGIMMPVLHFISDSVYMIVALVAGLQVMAGQLTIGNMQAFVQYIWQISQPIQTITQLAGLLQSAKSS
LERIFAVLDEADDAMLVTDQLDEDLTGQVSFNHVDFSYQSDKPLIKEFTLDVNPGEMIAIVGPTGAGKTTLINLLMRFYD
VNKGSITVDGHDIRDLSRQSYRRQFGMVLQDAWLYEGTIQDNLRFGNLEASDEAIVEAAKAANVDHFIRTLPGGYHMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHDSLLAAQGFYFDLYHSQFKSSQP

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=70835 H7678_RS04300 WP_003061906.1 841293..843065(+) (rcrQ) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGGCAGAGCAACATGTTTTTAAGCGGGTGTGGACCTATTTAAGGGCCTACCGTGGCTTAATCTTTTTAGCAGTTTTCCT
TAAAATTATCAGTGCTGTTATGAGTGTCTTGGAACCCTTTGTGCTTGGTTTAGTTATTACAGAATTGTCATCTAATCTTC
TTGATATGGCTAAGGGAATTGAAGGAGCAGGGATTAATACCTCTTATATTGCTTTTTTACTGCTTGTCTATTTTATTCGT
GCATTATGTTATGAAATCGGAGCCTATGGGTCAAATTATGTCATGACCAAGGCTGTTCAATCTACTATTCGTGATTTGAG
ACAGGCCTTGAGTCAAAAAATTAATCGTATTCCTGTCTCTTATTTTGACCAACACCAGTTTGGGGATATGCTGGGACGCT
TTACCTCAGATGTTGAGACAGTGTCAAATGCTTTGCAACAGTCTTTCTTGCAGATTGTCAATGCCTTTCTCACCATTTTT
CTCGTGATGGGAATGGTCTTGTACCTCAATCTGACACTAGCTTTGATTGTGATTGTTGCTATTCCTATTATCTATGCTTC
ATCTCAATTCATTTTAAAAAAATCACAACCTTATTTTAAAGAGCAAGCTAAGGTGTTAGGAGAGATGAATGGTTTTGTTC
AGGAAAATCTATCGGGTTTTAACGTCTTAAAACTTTACGGCCGCGAAGAAGCCTCAGAGCAAGCCTTCCATCAGATTACT
GAACACTTGCAAGAGGTTGGGTTTAAGGCAAGCTTTTTATCCGGTATTATGATGCCTGTTTTGCATTTTATTTCTGATTC
TGTCTATATGATTGTTGCTTTGGTCGCAGGTCTGCAAGTTATGGCAGGACAATTGACCATTGGGAATATGCAAGCTTTTG
TTCAATATATTTGGCAAATCAGTCAGCCAATTCAAACCATTACCCAGTTAGCAGGTTTATTACAGAGTGCTAAATCATCC
TTAGAACGTATTTTTGCGGTTCTGGATGAGGCAGATGATGCCATGCTTGTGACAGATCAACTGGATGAGGATTTAACAGG
TCAAGTCTCATTTAACCATGTGGATTTTTCCTATCAGTCTGATAAACCTTTGATCAAAGAGTTTACACTTGATGTTAACC
CCGGTGAGATGATTGCGATTGTAGGACCAACTGGAGCTGGGAAAACGACTCTCATTAATCTCTTGATGCGTTTTTATGAT
GTTAATAAAGGATCTATTACTGTTGATGGGCATGATATTCGTGACCTGTCACGTCAATCCTATCGTCGCCAATTTGGTAT
GGTCCTACAAGATGCTTGGCTTTACGAAGGGACAATCCAAGATAACCTTCGCTTTGGGAACCTTGAAGCCAGCGATGAGG
CTATTGTAGAAGCAGCCAAAGCTGCCAATGTGGATCATTTTATCAGAACCTTGCCAGGTGGGTACCACATGGTGATGAAC
CAAGAATCTAGTAATATTTCCTTAGGTCAAAAACAACTCTTAACCATTGCAAGGGCCTTGTTGGCTGATCCTAAAATTCT
GATTTTAGATGAAGCGACCTCTTCAGTAGATACTAGGCTAGAATTATTGATTCAAAAGGCGATGAAGCGGTTAATGAAAG
GACGAACAAGCTTTGTAATCGCTCACCGTCTGTCTACAATTCAAGAAGCTGATAAGATTCTAGTATTAAAAGATGGTCAG
ATCATTGAACAAGGGAACCATGATAGTTTATTGGCTGCTCAAGGTTTCTATTTTGATCTCTATCATAGTCAATTTAAATC
CAGTCAACCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.463

99.831

0.434

Multiple sequence alignment