Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NLY38_RS03890 Genome accession   NZ_CP100553
Coordinates   842373..843590 (-) Length   405 a.a.
NCBI ID   WP_195881053.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain KHPS2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 837373..848590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY38_RS03850 (NLY38_03850) - 837972..838145 (-) 174 WP_003242714.1 DUF3094 domain-containing protein -
  NLY38_RS03855 (NLY38_03855) - 838170..838718 (-) 549 WP_195881057.1 MOSC domain-containing protein -
  NLY38_RS03860 (NLY38_03860) - 838715..839344 (-) 630 WP_003242718.1 DUF1780 domain-containing protein -
  NLY38_RS03865 (NLY38_03865) - 839471..840160 (+) 690 WP_195881056.1 energy-coupling factor ABC transporter permease -
  NLY38_RS03870 (NLY38_03870) - 840269..840484 (+) 216 WP_096827395.1 hypothetical protein -
  NLY38_RS03875 (NLY38_03875) yacG 840536..840730 (-) 195 WP_003242724.1 DNA gyrase inhibitor YacG -
  NLY38_RS03880 (NLY38_03880) coaE 840727..841335 (-) 609 WP_195881055.1 dephospho-CoA kinase -
  NLY38_RS03885 (NLY38_03885) pilD 841503..842372 (-) 870 WP_195881054.1 A24 family peptidase Machinery gene
  NLY38_RS03890 (NLY38_03890) pilC 842373..843590 (-) 1218 WP_195881053.1 type II secretion system F family protein Machinery gene
  NLY38_RS03895 (NLY38_03895) pilB 843593..845296 (-) 1704 WP_195881052.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NLY38_RS03900 (NLY38_03900) - 845520..845993 (+) 474 WP_195881051.1 pilin -
  NLY38_RS03910 (NLY38_03910) - 846093..846503 (+) 411 WP_302055162.1 pilin -
  NLY38_RS03915 (NLY38_03915) nadC 846722..847570 (-) 849 WP_195881049.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44100.84 Da        Isoelectric Point: 9.8651

>NTDB_id=705820 NLY38_RS03890 WP_195881053.1 842373..843590(-) (pilC) [Pseudomonas hydrolytica strain KHPS2]
MAEKALKTSAFKWEGKDRRGAVVSGVINGQNPALVKAQLRKQGINPTKVRKESSLSFGKGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLIDEVKQEVAAGNSFATSLRKKPEYFDELYCNLVESGEQAGALENLLDRIATYKEKT
EALKAKIKKAMNYPIAVIVVAVIVSAILLIKVVPQFESVFASFGAELPAFTQMVIGISQALQKWWFVVLIVMLAIGFSFK
EALKRSQKFRDAVDRGILKLPIVGDILYKSAVARFARTLSTTFAAGVPLVDALDSVSGATGNVVFRNATNKIKADVSTGM
QLNFSMRTTGTFPSMAIQMTAIGEESGALDEMLDKVASFYEEEVDNMVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=705820 NLY38_RS03890 WP_195881053.1 842373..843590(-) (pilC) [Pseudomonas hydrolytica strain KHPS2]
ATGGCCGAAAAAGCTCTAAAAACCAGCGCATTCAAATGGGAAGGCAAAGACAGACGCGGCGCGGTCGTCTCCGGGGTCAT
CAATGGGCAAAACCCCGCGCTGGTCAAGGCGCAACTGCGCAAGCAGGGTATCAATCCAACCAAGGTACGCAAGGAGTCTT
CTCTGTCCTTTGGCAAGGGCAAGAAGATCAAACCCATGGATATCGCCCTGTTTACCCGGCAGATGGCGACCATGATGAAG
GCCGGTGTACCACTGCTGCAGTCCTTCGATATCATCGGCGAGGGCTTCGACAACCCCAATATGCGCAAGCTAATCGATGA
GGTGAAGCAGGAAGTGGCCGCCGGTAACAGCTTCGCTACCTCACTGCGCAAGAAGCCCGAGTACTTCGACGAACTATATT
GCAATCTGGTTGAGTCCGGCGAGCAGGCCGGTGCCTTGGAAAACCTGCTGGACCGGATTGCTACCTATAAGGAAAAGACC
GAAGCACTGAAGGCCAAGATCAAGAAAGCGATGAATTACCCTATAGCGGTAATCGTCGTAGCCGTGATCGTCTCGGCTAT
TTTGCTGATCAAGGTTGTTCCACAGTTCGAGTCGGTTTTTGCCAGTTTTGGAGCCGAGCTTCCGGCTTTTACCCAGATGG
TGATCGGCATTTCACAGGCGCTGCAAAAATGGTGGTTTGTCGTACTGATCGTTATGCTTGCGATTGGCTTTTCCTTCAAA
GAGGCCCTCAAGCGCTCACAAAAATTCAGGGATGCGGTTGATCGCGGAATTTTGAAGCTGCCGATAGTCGGGGACATTCT
ATATAAATCTGCCGTAGCCCGTTTTGCCCGAACCCTGTCGACTACCTTCGCTGCCGGCGTACCGCTGGTAGATGCTCTAG
ATTCGGTATCCGGAGCTACCGGCAATGTGGTGTTCAGGAACGCCACCAATAAAATCAAAGCAGATGTATCGACCGGCATG
CAGCTGAATTTCTCAATGCGTACCACGGGCACCTTCCCATCCATGGCAATACAGATGACCGCCATCGGTGAAGAATCTGG
CGCCTTGGATGAAATGTTGGATAAAGTTGCCAGCTTCTACGAAGAAGAAGTAGACAATATGGTCGATGGCTTAACCAGCC
TGATGGAACCTCTCATCATGTCCGTACTGGGCGTACTGGTCGGCGGCCTAATCATTGCAATGTACCTACCAATCTTCCAG
CTGGGCGCAGTAGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.741

100

0.807
  pilC Acinetobacter baylyi ADP1

59.852

100

0.6
  pilC Acinetobacter baumannii D1279779

59.506

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria meningitidis 44/76-A

44.363

100

0.447
  pilG Neisseria gonorrhoeae MS11

44.363

100

0.447
  pilC Vibrio cholerae strain A1552

41.975

100

0.42
  pilC Vibrio campbellii strain DS40M4

41.31

98.025

0.405
  pilC Thermus thermophilus HB27

37.065

99.259

0.368