Detailed information NTG0705819

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NLY38_RS03885
• Genome accession: NZ_CP100553
• Coordinates: 841503..842372 (-)
• Length: 289 a.a.
• NCBI ID: WP_195881054.1
• Uniprot ID: -
• Organism: Pseudomonas hydrolytica strain KHPS2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 836503..847372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLY38_RS03845 (NLY38_03845)	-	836607..837908 (-)	1302	WP_011920931.1	NAD(P)/FAD-dependent oxidoreductase	-
NLY38_RS03850 (NLY38_03850)	-	837972..838145 (-)	174	WP_003242714.1	DUF3094 domain-containing protein	-
NLY38_RS03855 (NLY38_03855)	-	838170..838718 (-)	549	WP_195881057.1	MOSC domain-containing protein	-
NLY38_RS03860 (NLY38_03860)	-	838715..839344 (-)	630	WP_003242718.1	DUF1780 domain-containing protein	-
NLY38_RS03865 (NLY38_03865)	-	839471..840160 (+)	690	WP_195881056.1	energy-coupling factor ABC transporter permease	-
NLY38_RS03870 (NLY38_03870)	-	840269..840484 (+)	216	WP_096827395.1	hypothetical protein	-
NLY38_RS03875 (NLY38_03875)	yacG	840536..840730 (-)	195	WP_003242724.1	DNA gyrase inhibitor YacG	-
NLY38_RS03880 (NLY38_03880)	coaE	840727..841335 (-)	609	WP_195881055.1	dephospho-CoA kinase	-
NLY38_RS03885 (NLY38_03885)	pilD	841503..842372 (-)	870	WP_195881054.1	A24 family peptidase	Machinery gene
NLY38_RS03890 (NLY38_03890)	pilC	842373..843590 (-)	1218	WP_195881053.1	type II secretion system F family protein	Machinery gene
NLY38_RS03895 (NLY38_03895)	pilB	843593..845296 (-)	1704	WP_195881052.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NLY38_RS03900 (NLY38_03900)	-	845520..845993 (+)	474	WP_195881051.1	pilin	-
NLY38_RS03910 (NLY38_03910)	-	846093..846503 (+)	411	WP_302055162.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31975.14 Da
• Isoelectric Point: 7.6129

>NTDB_id=705819 NLY38_RS03885 WP_195881054.1 841503..842372(-) (pilD) [Pseudomonas hydrolytica strain KHPS2]
MLVIDFLASHMLAFVSCVLLLGLLIGSFLNVVIYRLPLMLQRDWQSQAREVLELPAVPPAQTLNLFLPNSSCPQCGHQIR
AWENIPVISYLFLRGKCSNCRTPISKRYPLVELACGLLSGYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLV
LPLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITRKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVILLRLRGSDSSTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=705819 NLY38_RS03885 WP_195881054.1 841503..842372(-) (pilD) [Pseudomonas hydrolytica strain KHPS2]
ATGCTCGTTATCGACTTTCTGGCCAGCCATATGCTGGCCTTTGTTTCATGCGTCCTGCTGCTGGGCCTACTGATTGGCAG
CTTCCTCAATGTTGTGATCTACCGCCTCCCTCTAATGCTGCAACGTGACTGGCAGAGCCAGGCGCGTGAGGTGCTGGAGT
TACCGGCAGTGCCACCCGCGCAGACCTTAAATCTGTTTCTACCGAACTCATCATGCCCGCAATGCGGCCATCAGATTCGC
GCTTGGGAAAACATCCCAGTAATCAGCTACCTCTTCCTGCGCGGTAAGTGCTCGAACTGCAGGACGCCGATCAGCAAGCG
CTATCCCTTGGTAGAGCTGGCTTGCGGACTGCTTTCCGGCTACGTCGCCTGGCATTTCGGTTTTACCTGGCAGGCTGGCG
CGATGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGATTCTGCCGGACGTACTGGTG
CTGCCGCTGTTATGGCTGGGCTTGATCGTCAATTACTTCGGACTATTCACCAGCCTGGAGGACGCGCTGTGGGGGGCGAT
TGCCGGTTATCTGAGCCTGTGGTCGGTGTATTGGCTGTTCAAGCTGATCACCCGCAAGGAAGGCATGGGTTATGGTGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCTTTGACCATTCTGCTTTCCTCGCTGGTCGGG
GCGGTGCTTGGGGTGATTCTGCTGCGCCTGCGCGGCAGCGATTCCAGTACGCCGATCCCCTTCGGACCCTATCTGGCCAT
TGCCGGCTGGATCGCCCTGCTCTGGGGTGACGTGATTACCGGTAGCTACCTGAAGTTTGCCGGGTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.169	98.27	0.522
pilD	Acinetobacter nosocomialis M2	52.817	98.27	0.519
pilD	Vibrio campbellii strain DS40M4	54.38	94.81	0.516
pilD	Vibrio cholerae strain A1552	54.851	92.734	0.509
pilD	Neisseria gonorrhoeae MS11	50.192	90.311	0.453