Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGCSD_RS01235 Genome accession   NZ_AP018726
Coordinates   215734..216129 (+) Length   131 a.a.
NCBI ID   WP_111714809.1    Uniprot ID   A0A9X7SC97
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 215734..234203 215734..216129 within 0


Gene organization within MGE regions


Location: 215734..234203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS01235 (FGCSD_0197) ssbA 215734..216129 (+) 396 WP_111714809.1 single-stranded DNA-binding protein Machinery gene
  FGCSD_RS01240 (FGCSD_0198) - 216639..217601 (+) 963 WP_129555200.1 ABC transporter substrate-binding protein -
  FGCSD_RS01245 (FGCSD_0199) - 217631..218590 (+) 960 WP_129555201.1 ABC transporter substrate-binding protein -
  FGCSD_RS01250 (FGCSD_0200) - 218760..219782 (+) 1023 WP_129555386.1 IS30 family transposase -
  FGCSD_RS01255 (FGCSD_0201) - 219836..220504 (-) 669 Protein_193 transposase -
  FGCSD_RS01260 (FGCSD_0202) - 220808..221611 (+) 804 WP_015016554.1 ABC transporter ATP-binding protein -
  FGCSD_RS01265 (FGCSD_0203) - 221747..222388 (-) 642 WP_022554132.1 deoxynucleoside kinase -
  FGCSD_RS01270 (FGCSD_0204) dusB 222408..223385 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  FGCSD_RS01275 (FGCSD_0205) hslO 223372..224244 (-) 873 WP_084916960.1 Hsp33 family molecular chaperone HslO -
  FGCSD_RS01285 (FGCSD_0206) - 224552..225781 (+) 1230 WP_231112733.1 pilin N-terminal domain-containing protein -
  FGCSD_RS01290 (FGCSD_0207) - 225870..226865 (+) 996 WP_129555202.1 IS30 family transposase -
  FGCSD_RS01295 (FGCSD_0208) - 226844..227311 (+) 468 Protein_200 SpaA isopeptide-forming pilin-related protein -
  FGCSD_RS01300 (FGCSD_0209) - 227400..228323 (+) 924 WP_129555203.1 SpaA isopeptide-forming pilin-related protein -
  FGCSD_RS01305 (FGCSD_0210) - 228325..229242 (+) 918 WP_129555204.1 class C sortase -
  FGCSD_RS01310 (FGCSD_0211) srtC2 229199..230050 (+) 852 WP_129555205.1 class C sortase SrtC2 -
  FGCSD_RS01315 (FGCSD_0212) - 230171..231193 (-) 1023 WP_129555386.1 IS30 family transposase -
  FGCSD_RS01325 (FGCSD_0215) - 232536..233081 (+) 546 WP_231112735.1 prealbumin-like fold domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14799.97 Da        Isoelectric Point: 7.1671

>NTDB_id=70564 FGCSD_RS01235 WP_111714809.1 215734..216129(+) (ssbA) [Streptococcus dysgalactiae strain Kdys0611]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=70564 FGCSD_RS01235 WP_111714809.1 215734..216129(+) (ssbA) [Streptococcus dysgalactiae strain Kdys0611]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAACATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCAGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGCTAGCAGAAACCTTGGTTTCTTATGCTAGTAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACTCGC
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGCCAGTCTTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATTTGGTTCTAGAAGAGGAGGAGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment