Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NLY75_RS00825 Genome accession   NZ_CP100432
Coordinates   127069..127464 (+) Length   131 a.a.
NCBI ID   WP_011921737.1    Uniprot ID   A0A0Z9FQS6
Organism   Streptococcus suis T15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 122069..132464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS00795 (NLY75_00795) pepA 122215..123276 (-) 1062 WP_023369094.1 glutamyl aminopeptidase -
  NLY75_RS00800 (NLY75_00800) - 123958..124242 (+) 285 WP_023369096.1 DUF4651 domain-containing protein -
  NLY75_RS00805 (NLY75_00805) - 124239..124559 (+) 321 WP_023369098.1 thioredoxin family protein -
  NLY75_RS00810 (NLY75_00810) - 124604..125560 (+) 957 WP_023369100.1 DUF1002 domain-containing protein -
  NLY75_RS00815 (NLY75_00815) ytpR 125579..126202 (+) 624 WP_023369102.1 YtpR family tRNA-binding protein -
  NLY75_RS00820 (NLY75_00820) - 126235..127014 (-) 780 WP_023369104.1 DUF2785 domain-containing protein -
  NLY75_RS00825 (NLY75_00825) ssbA 127069..127464 (+) 396 WP_011921737.1 single-stranded DNA-binding protein Machinery gene
  NLY75_RS00830 (NLY75_00830) - 127583..127828 (-) 246 WP_023369106.1 hypothetical protein -
  NLY75_RS00835 (NLY75_00835) groES 128028..128309 (+) 282 WP_023369107.1 co-chaperone GroES -
  NLY75_RS00840 (NLY75_00840) groL 128320..129942 (+) 1623 WP_023369109.1 chaperonin GroEL -
  NLY75_RS00845 (NLY75_00845) rpsL 130174..130587 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  NLY75_RS00850 (NLY75_00850) rpsG 130604..131074 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14868.73 Da        Isoelectric Point: 5.0026

>NTDB_id=705302 NLY75_RS00825 WP_011921737.1 127069..127464(+) (ssbA) [Streptococcus suis T15]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=705302 NLY75_RS00825 WP_011921737.1 127069..127464(+) (ssbA) [Streptococcus suis T15]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGTAGCAACCACTATGTGACAGAGATTTTGGGACAATCGTTCCAGTTGCTCGAAAGCCGCGCTCA
ACGTGCCATGCGTGAAAACAATACTGGCGATGACCTAGCAGATTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9FQS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374