Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NLY76_RS00825 Genome accession   NZ_CP100430
Coordinates   133187..133582 (+) Length   131 a.a.
NCBI ID   WP_015646304.1    Uniprot ID   A0A0Z8MGY0
Organism   Streptococcus suis strain LSS42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 128187..138582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS00795 (NLY76_00795) pepA 128461..129522 (-) 1062 WP_044770163.1 glutamyl aminopeptidase -
  NLY76_RS00800 (NLY76_00800) - 130076..130360 (+) 285 WP_024406065.1 DUF4651 domain-containing protein -
  NLY76_RS00805 (NLY76_00805) - 130357..130677 (+) 321 WP_024388908.1 thioredoxin family protein -
  NLY76_RS00810 (NLY76_00810) - 130722..131678 (+) 957 WP_029752527.1 DUF1002 domain-containing protein -
  NLY76_RS00815 (NLY76_00815) ytpR 131697..132320 (+) 624 WP_015646302.1 YtpR family tRNA-binding protein -
  NLY76_RS00820 (NLY76_00820) - 132353..133132 (-) 780 WP_024389474.1 DUF2785 domain-containing protein -
  NLY76_RS00825 (NLY76_00825) ssbA 133187..133582 (+) 396 WP_015646304.1 single-stranded DNA-binding protein Machinery gene
  NLY76_RS00830 (NLY76_00830) - 134049..134216 (-) 168 WP_162841136.1 hypothetical protein -
  NLY76_RS00835 (NLY76_00835) groES 134414..134695 (+) 282 WP_015646306.1 co-chaperone GroES -
  NLY76_RS00840 (NLY76_00840) groL 134707..136329 (+) 1623 WP_044687014.1 chaperonin GroEL -
  NLY76_RS00845 (NLY76_00845) rpsL 136561..136974 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  NLY76_RS00850 (NLY76_00850) rpsG 136991..137461 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14837.68 Da        Isoelectric Point: 5.0026

>NTDB_id=705196 NLY76_RS00825 WP_015646304.1 133187..133582(+) (ssbA) [Streptococcus suis strain LSS42]
MYNKVIAIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=705196 NLY76_RS00825 WP_015646304.1 133187..133582(+) (ssbA) [Streptococcus suis strain LSS42]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8MGY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382