Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NLG45_RS03510 Genome accession   NZ_CP100428
Coordinates   718661..719086 (-) Length   141 a.a.
NCBI ID   WP_218979112.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RMSA24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 713661..724086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLG45_RS03455 (NLG45_03455) - 713776..713982 (-) 207 WP_254414396.1 hypothetical protein -
  NLG45_RS03460 (NLG45_03460) - 713996..714238 (-) 243 WP_254414397.1 SAV1978 family virulence-associated passenger protein -
  NLG45_RS03465 (NLG45_03465) - 714242..714589 (-) 348 WP_254414398.1 SA1788 family PVL leukocidin-associated protein -
  NLG45_RS03470 (NLG45_03470) - 714590..714775 (-) 186 WP_001187254.1 DUF3113 family protein -
  NLG45_RS03475 (NLG45_03475) - 714780..715184 (-) 405 WP_000049784.1 DUF1064 domain-containing protein -
  NLG45_RS03480 (NLG45_03480) - 715195..715416 (-) 222 WP_254414399.1 DUF3269 family protein -
  NLG45_RS03485 (NLG45_03485) - 715419..715634 (-) 216 WP_218979117.1 hypothetical protein -
  NLG45_RS03490 (NLG45_03490) - 715631..716872 (-) 1242 WP_218979116.1 DnaB helicase C-terminal domain-containing protein -
  NLG45_RS03495 (NLG45_03495) - 716869..717225 (-) 357 WP_198914091.1 hypothetical protein -
  NLG45_RS03500 (NLG45_03500) - 717225..717980 (-) 756 WP_218979114.1 DnaD domain protein -
  NLG45_RS03505 (NLG45_03505) - 717973..718647 (-) 675 WP_218979113.1 putative HNHc nuclease -
  NLG45_RS03510 (NLG45_03510) ssbA 718661..719086 (-) 426 WP_218979112.1 single-stranded DNA-binding protein Machinery gene
  NLG45_RS03515 (NLG45_03515) - 719086..719724 (-) 639 WP_218979121.1 ERF family protein -
  NLG45_RS03520 (NLG45_03520) - 719724..720203 (-) 480 WP_218979111.1 siphovirus Gp157 family protein -
  NLG45_RS03525 (NLG45_03525) - 720217..720477 (-) 261 WP_218979110.1 DUF1108 family protein -
  NLG45_RS03530 (NLG45_03530) - 720518..720784 (-) 267 WP_254414400.1 DUF2482 family protein -
  NLG45_RS03535 (NLG45_03535) - 720874..721035 (-) 162 WP_218979108.1 DUF1270 family protein -
  NLG45_RS03540 (NLG45_03540) - 721137..721850 (-) 714 WP_218979107.1 BRO family protein -
  NLG45_RS03545 (NLG45_03545) - 721865..722104 (-) 240 WP_031921281.1 helix-turn-helix transcriptional regulator -
  NLG45_RS03550 (NLG45_03550) - 722297..722629 (+) 333 WP_001260004.1 helix-turn-helix transcriptional regulator -
  NLG45_RS03555 (NLG45_03555) - 722641..723099 (+) 459 WP_031921280.1 ImmA/IrrE family metallo-endopeptidase -
  NLG45_RS03560 (NLG45_03560) - 723120..723611 (+) 492 WP_218979106.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15925.55 Da        Isoelectric Point: 5.2071

>NTDB_id=705156 NLG45_RS03510 WP_218979112.1 718661..719086(-) (ssbA) [Staphylococcus aureus strain RMSA24]
MLNRVVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQGQTQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=705156 NLG45_RS03510 WP_218979112.1 718661..719086(-) (ssbA) [Staphylococcus aureus strain RMSA24]
ATGTTAAACAGAGTAGTTTTAGTAGGGCGACTAACGAAAGACCCTGAATATAGAACAACGCCAAATGGTGTGAGTGTGAC
CACTTTCACTATCGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAGGACAAACTCAAACTGGTAATAATCCGTTTGACAATACTGAAG
AAGATTTTTCAGACCTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

80.374

75.887

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

55.263

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.565

81.56

0.404
  ssbB/cilA Streptococcus mitis NCTC 12261

47.458

83.688

0.397
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.458

83.688

0.397
  ssbA Streptococcus mutans UA159

48.696

81.56

0.397
  ssbB/cilA Streptococcus mitis SK321

46.61

83.688

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

46.61

83.688

0.39
  ssbB/cilA Streptococcus pneumoniae D39

46.61

83.688

0.39
  ssbB/cilA Streptococcus pneumoniae R6

46.61

83.688

0.39