Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NIN90_RS13900 Genome accession   NZ_CP100422
Coordinates   2991109..2992833 (-) Length   574 a.a.
NCBI ID   WP_004728568.1    Uniprot ID   -
Organism   Vibrio furnissii strain 104486766     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2986109..2997833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS13880 - 2986811..2987641 (-) 831 WP_055465832.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  NIN90_RS13885 - 2987736..2989244 (-) 1509 WP_232658222.1 SPOR domain-containing protein -
  NIN90_RS13890 aroB 2989290..2990375 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  NIN90_RS13895 aroK 2990403..2990921 (-) 519 WP_004728569.1 shikimate kinase AroK -
  NIN90_RS13900 pilQ 2991109..2992833 (-) 1725 WP_004728568.1 type IV pilus secretin PilQ Machinery gene
  NIN90_RS13905 pilP 2992858..2993370 (-) 513 WP_232658223.1 pilus assembly protein PilP Machinery gene
  NIN90_RS13910 pilO 2993360..2993950 (-) 591 WP_232658224.1 type 4a pilus biogenesis protein PilO Machinery gene
  NIN90_RS13915 pilN 2993943..2994533 (-) 591 WP_232658225.1 PilN domain-containing protein Machinery gene
  NIN90_RS13920 pilM 2994523..2995527 (-) 1005 WP_232658226.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 61928.62 Da        Isoelectric Point: 4.4610

>NTDB_id=705083 NIN90_RS13900 WP_004728568.1 2991109..2992833(-) (pilQ) [Vibrio furnissii strain 104486766]
MIKGLNASTAWGIRCLFVGVCLLLSAATLAQEAAANQLKNIDFRINKDKAAVLIVELASASAVVDVQKTEQGLTIELLKT
DVSDDKLYLVDVRDFATAVENIEVFRQQPSTVLVATVQGAFNYEYSLKGNYLEVVISKVSAQEPQPKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNQFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDRREQQQLEK
ARMAEELGDLQSEIIKINFAKASDIAQMIGGDGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVKQVQ
IEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVA
KLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLV
LDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGK
SELLIFVTPKVVIQ

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=705083 NIN90_RS13900 WP_004728568.1 2991109..2992833(-) (pilQ) [Vibrio furnissii strain 104486766]
ATGATTAAAGGACTAAATGCCTCCACGGCTTGGGGAATACGTTGTCTGTTTGTGGGCGTATGCCTGCTGTTATCTGCCGC
CACATTAGCCCAGGAAGCGGCGGCCAATCAGCTGAAAAATATCGACTTTCGCATCAATAAAGACAAAGCGGCGGTGTTGA
TTGTCGAACTGGCGTCGGCTTCTGCGGTGGTGGATGTGCAGAAAACGGAGCAAGGATTGACGATTGAATTGCTTAAAACC
GATGTTAGCGATGACAAACTGTATTTGGTGGACGTGCGCGATTTTGCCACGGCGGTGGAAAACATAGAAGTGTTTCGCCA
GCAACCGAGCACGGTGCTGGTGGCGACGGTGCAAGGGGCATTCAATTACGAATACAGCCTGAAAGGCAATTACTTGGAGG
TGGTGATCAGCAAAGTCAGTGCGCAAGAACCGCAACCGAAAAGTGTCTTAGAAAAAGAGGGCAAGCTGATTTCGATTAAC
TTCCAAGACATTCCCGTGCGCAACGTGCTGCAGCTCATCGCCGACTACAACCAGTTCAACTTGGTGGTCTCTGATTCCGT
CAGCGGTAACTTGACATTGCGCCTCGATGGCGTGCCGTGGCAACAAGTGCTGGATATCATTTTACAAGTCAAAGGGCTGG
ACAAACGGGTCGATGGCAACGTCATTCTGGTGGCACCCAAAGAGGAGCTGGACCGACGCGAGCAGCAGCAATTGGAAAAG
GCGCGCATGGCGGAAGAGCTGGGCGATCTGCAATCGGAAATCATCAAAATCAATTTCGCCAAGGCATCTGACATTGCACA
GATGATTGGCGGCGATGGTGCGGTGAACATGTTGTCGGAGCGTGGCTCCATCAGTATTGATGAGCGCACCAACGCCTTGC
TACTGCGCGAGCTGCCTGACAACATTCACGTGATCCGCGACATCGTGGCCTCTCTCGACATTCCGGTCAAACAAGTGCAA
ATCGAAGCGCGCATCGTCACGGTGAATGAGGGCGATTTGGATGAGCTTGGCGTGCGCTGGGGCTTTAGTTCCACCAACGG
GAGCACCACCACTGGTGGCTCGATTGAAAGTAATCTCGGTGCCATTGGGTTGTATGACGGCAGCAGTGATTCGGGCGATG
GCGCCGCGATTGATGATTTCCTCAATGTGAACCTCGCCGCCACCTCCGCCAATGCATCCAGTATTGCGTTTCAAGTGGCC
AAGCTGGGCGCTGACACCTTACTTGATCTTGAATTGTCGGCGATGCAGCGCGAGTCGAAAGCGGAAATTATTTCCAGCCC
AAGGCTGATCACCACCAACAAACAGCCGGCTTACATTGAACAGGGGACGGAAATTCCTTATCTCGAATCGTCCTCCAGTG
GCGCAACCAGCGTGGCATTTAAAAAAGCGGTCCTCAGCCTCAAAGTGACCCCGCAAATCACGCCTGACAACCGTTTGGTG
CTCGATTTGAGCGTGACCCAAGACCGACCGGGTGAAGTGGTGAAAACGGGCACGGGCGAAGCGGTGGCGATTAACACGCA
GCGTATTGGGACCCAAGTGTTAGTTAATAACGGTGAAACCGTGGTGCTGGGCGGCATTTTTCAACACAGCGTGACCAGTT
CTGTGGACAAAGTGCCCTTGCTTGGGGACTTGCCATTACTGGGCGCGCTGTTCCGTCGTAGCTACGAACAGATGGGGAAA
AGTGAGCTACTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)

Secretin and TonB N terminus short domain (STN)

(179-227)

Bacterial type II and III secretion system protein (Secretin)

(414-572)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

80.556

100

0.808
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.556

100

0.808
  pilQ Vibrio campbellii strain DS40M4

77.413

95.645

0.74
  pilQ Legionella pneumophila strain ERS1305867

41.575

95.122

0.395
  pilQ Legionella pneumophila strain Lp02

41.575

95.122

0.395
  comQ Acinetobacter baylyi ADP1

38.737

100

0.395
  pilQ Pseudomonas aeruginosa PAK

40.468

96.864

0.392
  pilQ Acinetobacter baumannii D1279779

37.113

100

0.376
  pilQ Acinetobacter baumannii strain A118

37.113

100

0.376