Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   NIN90_RS13910 Genome accession   NZ_CP100422
Coordinates   2993360..2993950 (-) Length   196 a.a.
NCBI ID   WP_232658224.1    Uniprot ID   -
Organism   Vibrio furnissii strain 104486766     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2988360..2998950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS13890 aroB 2989290..2990375 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  NIN90_RS13895 aroK 2990403..2990921 (-) 519 WP_004728569.1 shikimate kinase AroK -
  NIN90_RS13900 pilQ 2991109..2992833 (-) 1725 WP_004728568.1 type IV pilus secretin PilQ Machinery gene
  NIN90_RS13905 pilP 2992858..2993370 (-) 513 WP_232658223.1 pilus assembly protein PilP Machinery gene
  NIN90_RS13910 pilO 2993360..2993950 (-) 591 WP_232658224.1 type 4a pilus biogenesis protein PilO Machinery gene
  NIN90_RS13915 pilN 2993943..2994533 (-) 591 WP_232658225.1 PilN domain-containing protein Machinery gene
  NIN90_RS13920 pilM 2994523..2995527 (-) 1005 WP_232658226.1 type IV pilus assembly protein PilM Machinery gene
  NIN90_RS13925 - 2995672..2998152 (+) 2481 WP_232658227.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22735.99 Da        Isoelectric Point: 5.0705

>NTDB_id=705085 NIN90_RS13910 WP_232658224.1 2993360..2993950(-) (pilO) [Vibrio furnissii strain 104486766]
MANVHDLELDEISEWPLVAQLVALVLLVLVLQGAGYWFYLQPKQDTLAARKQQEQTLKSTIRIKASKVATLPKLKIQLDE
LAQRYDFLLRQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNQQFLYRLPLNIELTGNYHDIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=705085 NIN90_RS13910 WP_232658224.1 2993360..2993950(-) (pilO) [Vibrio furnissii strain 104486766]
ATGGCTAACGTACACGATCTGGAACTGGACGAAATCAGCGAATGGCCGTTGGTGGCTCAATTGGTCGCCTTGGTGCTGCT
GGTGTTGGTGTTGCAGGGCGCGGGATACTGGTTCTATTTGCAGCCTAAACAAGACACATTGGCCGCACGCAAGCAGCAAG
AGCAAACGCTGAAGTCGACGATTCGCATCAAAGCCAGCAAAGTCGCGACATTGCCGAAGCTCAAGATTCAGCTGGATGAA
CTGGCACAGCGGTACGACTTCCTGTTGCGTCAGCTGCCGGTGCAAAAAGAGCTCGCCAGCATGTTGGCGTCGGTGAACGA
GTTGGGGCTCGACAACAGCCTGACTTTTACTCGCATCGATTGGGGGGAAAAGCAGAATCAGCAATTTCTCTATCGGCTGC
CGCTCAATATCGAATTGACCGGTAATTATCACGACATCGGCGATTTTTCTGAAGCGATCGCGCGTCTACCGCGCATCATT
AATTTTGACGACGTTGACTGGCAGCGCGTCAGTCAAGAGAGCAGCACGCTCCATTTCCGCGTTCGCGCCTATACCTATCA
GTTCAAACCGGAGGTCAGTGATGAACAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

78.061

100

0.781
  pilO Vibrio campbellii strain DS40M4

70.526

96.939

0.684