Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NKT35_RS11920 Genome accession   NZ_CP100128
Coordinates   2601031..2602254 (+) Length   407 a.a.
NCBI ID   WP_254293180.1    Uniprot ID   -
Organism   Chromobacterium sp. IIBBL 290-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2596031..2607254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKT35_RS11900 (NKT35_11900) - 2596382..2597200 (+) 819 WP_254293172.1 inner membrane protein YpjD -
  NKT35_RS11905 (NKT35_11905) comE 2597296..2597574 (+) 279 WP_371926504.1 ComEA family DNA-binding protein Machinery gene
  NKT35_RS11910 (NKT35_11910) - 2597957..2599099 (+) 1143 WP_254293176.1 porin -
  NKT35_RS11915 (NKT35_11915) pilF 2599281..2600987 (+) 1707 WP_254293178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NKT35_RS11920 (NKT35_11920) pilC 2601031..2602254 (+) 1224 WP_254293180.1 type II secretion system F family protein Machinery gene
  NKT35_RS11925 (NKT35_11925) - 2602254..2603174 (+) 921 WP_254293182.1 A24 family peptidase -
  NKT35_RS11930 (NKT35_11930) coaE 2603159..2603773 (+) 615 WP_254293184.1 dephospho-CoA kinase -
  NKT35_RS11935 (NKT35_11935) zapD 2603810..2604568 (+) 759 WP_254293186.1 cell division protein ZapD -
  NKT35_RS11940 (NKT35_11940) yacG 2604574..2604765 (+) 192 WP_254293188.1 DNA gyrase inhibitor YacG -
  NKT35_RS11945 (NKT35_11945) - 2604834..2606075 (-) 1242 WP_254293190.1 N-acetylmuramoyl-L-alanine amidase -
  NKT35_RS11950 (NKT35_11950) tsaE 2606033..2606527 (-) 495 WP_254293192.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44639.37 Da        Isoelectric Point: 10.0226

>NTDB_id=703714 NKT35_RS11920 WP_254293180.1 2601031..2602254(+) (pilC) [Chromobacterium sp. IIBBL 290-4]
MATPAAKKANPGYIWEWEGKDRAGKAIRGEVRAESESVAKTQLRRQGINVTKIRKRRSGFGKKITEKDITLFTRQLSTMM
RAGVPLLQAFDISAKGHGNPAVTRMLLEVRADVETGSSLAEAFRKKPLYFDKLFCNLIAAGETGGVLDSLLDKLATYKEK
VMAIKAKIKSALIYPTAIVGTALVITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFWWLIFGSIFGSLFAF
FYAFKRTPKLQEQMDRLLLRLPVIGDIIRKATIARWARTLSTLFAAGVPLVEALDSVGGAAGNQVYAEATKRIQSDVSAG
SSLNFSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGVLIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=703714 NKT35_RS11920 WP_254293180.1 2601031..2602254(+) (pilC) [Chromobacterium sp. IIBBL 290-4]
ATGGCGACACCGGCTGCCAAAAAGGCGAATCCCGGATATATCTGGGAATGGGAAGGCAAGGACCGCGCCGGCAAGGCGAT
ACGGGGGGAGGTGCGGGCCGAGTCGGAAAGCGTGGCCAAAACCCAGTTGCGCCGCCAGGGCATCAACGTCACCAAGATAC
GCAAGCGCCGCAGCGGTTTCGGCAAGAAAATCACCGAAAAAGACATCACCCTGTTCACGCGCCAGCTGTCCACCATGATG
CGCGCCGGCGTGCCCTTATTGCAGGCCTTCGATATTTCGGCCAAGGGGCATGGCAATCCCGCGGTGACGCGGATGCTGCT
GGAGGTGAGGGCGGATGTGGAGACCGGCTCGTCGCTGGCGGAGGCGTTCCGCAAAAAACCCTTGTATTTCGACAAGCTGT
TTTGCAATCTGATCGCCGCCGGCGAGACCGGCGGGGTGCTGGATAGCCTGCTGGACAAACTGGCCACGTATAAAGAAAAA
GTCATGGCGATCAAGGCCAAGATCAAGTCGGCCCTGATTTATCCGACGGCCATCGTGGGCACTGCGTTGGTGATTACCGC
GGTGATCATGATTTACGTGATTCCGGCTTTCAAGGATTTGTTTTCCAGTTTCGGCGCCAATTTGCCGGCGCCCACATTGT
TTGTGATCTGGCTGTCCGACCAGTTTGTCCATTTTTGGTGGCTGATTTTCGGCAGCATTTTCGGCTCGCTGTTCGCCTTC
TTTTACGCATTCAAGCGCACGCCCAAGCTGCAGGAGCAGATGGACAGGCTATTGCTGAGGTTGCCGGTGATAGGCGACAT
CATCCGCAAGGCCACCATCGCGCGGTGGGCGCGCACGCTGTCCACGCTGTTCGCGGCTGGAGTGCCCTTGGTGGAGGCTC
TGGACTCGGTGGGCGGCGCGGCGGGCAATCAGGTGTATGCGGAGGCGACCAAGCGCATCCAGTCCGATGTCAGCGCCGGC
TCCAGCCTGAATTTTTCGATGCAGCGCACCGATCTGTTTCCCAATATGGTGCTGCAAATGACCTCGATCGGCGAGGAGTC
GGGCTCTCTGGATCAGATGCTGGACAAAGTTGCCGACTTTTATGAAGAAGAAGTGGATAATGCGGTGGCCGCGCTGTCCA
GCCTGCTGGAGCCGGCCATCATGGTGATTCTGGGCGTGTTGATCGGCGGCCTGGTGATCGCGATGTACATGCCGATCTTC
AAAATGGGACAAGTGGTGGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.263

0.538
  pilC Legionella pneumophila strain ERS1305867

53.465

99.263

0.531
  pilG Neisseria gonorrhoeae MS11

53.964

96.069

0.518
  pilG Neisseria meningitidis 44/76-A

53.964

96.069

0.518
  pilC Acinetobacter baylyi ADP1

50.369

100

0.504
  pilC Acinetobacter baumannii D1279779

50.123

100

0.501
  pilC Vibrio campbellii strain DS40M4

40.201

97.789

0.393
  pilC Vibrio cholerae strain A1552

38.442

97.789

0.376
  pilC Thermus thermophilus HB27

37.343

98.034

0.366