Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NKT35_RS11905 Genome accession   NZ_CP100128
Coordinates   2597296..2597574 (+) Length   92 a.a.
NCBI ID   WP_371926504.1    Uniprot ID   -
Organism   Chromobacterium sp. IIBBL 290-4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2592296..2602574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKT35_RS11890 (NKT35_11890) purB 2593376..2594746 (-) 1371 WP_254293168.1 adenylosuccinate lyase -
  NKT35_RS11895 (NKT35_11895) ffh 2594916..2596271 (-) 1356 WP_254293170.1 signal recognition particle protein -
  NKT35_RS11900 (NKT35_11900) - 2596382..2597200 (+) 819 WP_254293172.1 inner membrane protein YpjD -
  NKT35_RS11905 (NKT35_11905) comE 2597296..2597574 (+) 279 WP_371926504.1 ComEA family DNA-binding protein Machinery gene
  NKT35_RS11910 (NKT35_11910) - 2597957..2599099 (+) 1143 WP_254293176.1 porin -
  NKT35_RS11915 (NKT35_11915) pilF 2599281..2600987 (+) 1707 WP_254293178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NKT35_RS11920 (NKT35_11920) pilC 2601031..2602254 (+) 1224 WP_254293180.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 9501.16 Da        Isoelectric Point: 10.6254

>NTDB_id=703712 NKT35_RS11905 WP_371926504.1 2597296..2597574(+) (comE) [Chromobacterium sp. IIBBL 290-4]
MLLCNFALAAVNLNTATQQQLEALKGIGPAKAKAIVDYRTKNGPFKTVDDLKKVSGIGDKTLEKLRKDLAVSGGAPAAAP
AAKPTAKPVATK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=703712 NKT35_RS11905 WP_371926504.1 2597296..2597574(+) (comE) [Chromobacterium sp. IIBBL 290-4]
ATGTTGTTGTGCAATTTCGCCCTGGCCGCGGTCAATCTCAATACCGCCACGCAGCAGCAATTGGAAGCGTTGAAGGGCAT
AGGCCCGGCCAAAGCCAAGGCCATCGTCGATTACCGGACCAAGAACGGCCCGTTCAAAACGGTGGACGATCTGAAGAAAG
TCTCCGGCATCGGCGACAAGACGCTGGAAAAGCTGCGCAAGGATTTGGCTGTGAGCGGCGGCGCGCCGGCAGCCGCGCCT
GCGGCTAAACCCACGGCCAAGCCTGTGGCAACCAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(11-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.427

96.739

0.565
  comE Neisseria gonorrhoeae MS11

58.427

96.739

0.565
  comE Neisseria gonorrhoeae MS11

58.427

96.739

0.565
  comE Neisseria gonorrhoeae MS11

58.427

96.739

0.565
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.286

76.087

0.413
  comEA Streptococcus thermophilus LMD-9

54.839

67.391

0.37