Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PCP76_RS27090 Genome accession   NZ_CP115297
Coordinates   5763224..5763898 (+) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain 135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5758224..5768898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS27075 (PCP76_27055) - 5758770..5761376 (-) 2607 WP_033970059.1 phosphomannomutase/phosphoglucomutase -
  PCP76_RS27080 (PCP76_27060) dut 5761413..5761868 (-) 456 WP_019372296.1 dUTP diphosphatase -
  PCP76_RS27085 (PCP76_27065) coaBC 5761876..5763084 (-) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PCP76_RS27090 (PCP76_27070) radC 5763224..5763898 (+) 675 WP_003096559.1 RadC family protein Machinery gene
  PCP76_RS27095 (PCP76_27075) - 5763915..5764463 (-) 549 WP_033978479.1 hypothetical protein -
  PCP76_RS27100 (PCP76_27080) - 5764489..5766069 (-) 1581 WP_033970057.1 ABC transporter substrate-binding protein -
  PCP76_RS27105 (PCP76_27085) rpmB 5766425..5766661 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  PCP76_RS27110 (PCP76_27090) rpmG 5766673..5766828 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  PCP76_RS27115 (PCP76_27095) - 5766963..5767325 (-) 363 WP_003096551.1 cupin domain-containing protein -
  PCP76_RS27120 (PCP76_27100) - 5767391..5768725 (-) 1335 WP_058178509.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=702855 PCP76_RS27090 WP_003096559.1 5763224..5763898(+) (radC) [Pseudomonas aeruginosa strain 135]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=702855 PCP76_RS27090 WP_003096559.1 5763224..5763898(+) (radC) [Pseudomonas aeruginosa strain 135]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACCGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGACGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGATGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397