Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PCP32_RS21105 Genome accession   NZ_CP115285
Coordinates   4533400..4534488 (+) Length   362 a.a.
NCBI ID   WP_058152004.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F007     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4528400..4539488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS21085 (PCP32_21080) rsmB 4529295..4530599 (-) 1305 WP_058152003.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP32_RS21090 (PCP32_21085) fmt 4530596..4531540 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PCP32_RS21095 (PCP32_21090) def 4531595..4532101 (-) 507 WP_003097293.1 peptide deformylase -
  PCP32_RS21100 (PCP32_21095) tsaP 4532240..4533265 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP32_RS21105 (PCP32_21100) dprA 4533400..4534488 (+) 1089 WP_058152004.1 DNA-processing protein DprA Machinery gene
  PCP32_RS21110 (PCP32_21105) - 4534529..4535086 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP32_RS21115 (PCP32_21110) - 4535096..4536073 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PCP32_RS21120 (PCP32_21115) hemF 4536264..4537181 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP32_RS21125 (PCP32_21120) aroE 4537239..4538063 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  PCP32_RS21130 (PCP32_21125) - 4538174..4539160 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37650.15 Da        Isoelectric Point: 6.7234

>NTDB_id=701917 PCP32_RS21105 WP_058152004.1 4533400..4534488(+) (dprA) [Pseudomonas aeruginosa strain F007]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLCAAP
YTSEGLAAASGMTLPDVLATLSELELDGWVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=701917 PCP32_RS21105 WP_058152004.1 4533400..4534488(+) (dprA) [Pseudomonas aeruginosa strain F007]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTCCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTCTCGGAGCTGCCGCTGGACAGTCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCTTGCCCCACCCTTTGCTGGCGCTGCTGTGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCTGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.625

97.238

0.395
  dprA Acinetobacter baumannii D1279779

38.462

96.961

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37
  dprA Neisseria meningitidis MC58

46.021

79.834

0.367
  dprA Neisseria meningitidis strain C311

46.021

79.834

0.367